Difference between revisions of "RXN-12583"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSDECARBOX-RXN LYSDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.ex...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12583 RXN-12583] == * direction: ** LEFT-TO-RIGHT * common name: ** pyruvate:thiamin diphosphat...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LYSDECARBOX-RXN LYSDECARBOX-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12583 RXN-12583] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* ec number:
+
* common name:
−
** [http://enzyme.expasy.org/EC/4.1.1.18 EC-4.1.1.18]
+
** pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)
 +
** pyruvate_dehydrogenase_e1_component_subunit_alpha-_mitochondrial
 +
** dihydrolipoamide_acetyltransferase
 +
** ORF
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[LYS]][c] '''=>''' 1 [[CADAVERINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[THIAMINE-PYROPHOSPHATE]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[2-ALPHA-HYDROXYETHYL-THPP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 L-lysine[c] '''=>''' 1 cadaverine[c] '''+''' 1 CO2[c]
+
** 1 H+[c] '''+''' 1 thiamine diphosphate[c] '''+''' 1 pyruvate[c] '''=>''' 1 CO2[c] '''+''' 1 2-(α-hydroxyethyl)thiamine diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10395]]
+
* Gene: [[Tiso_gene_7519]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17539]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6983]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_11362]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_2515]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_2693]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-461]], L-lysine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-461 PWY0-461]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-5468]], lupanine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5468 PWY-5468]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6381]], bisucaberin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6381 PWY-6381]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY0-1303]], aminopropylcadaverine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1303 PWY0-1303]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6328]], L-lysine degradation X: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6328 PWY-6328]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6375]], desferrioxamine E biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6375 PWY-6375]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6376]], desferrioxamine B biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6376 PWY-6376]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22352 22352]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00462 R00462]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00014 R00014]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/P05033 P05033]
+
−
** [http://www.uniprot.org/uniprot/P21885 P21885]
+
−
** [http://www.uniprot.org/uniprot/P0A9H3 P0A9H3]
+
−
** [http://www.uniprot.org/uniprot/P52095 P52095]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-4.1.1.18}}
+
{{#set: common name=pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)}}
−
{{#set: gene associated=Tiso_gene_10395}}
+
{{#set: common name=pyruvate_dehydrogenase_e1_component_subunit_alpha-_mitochondrial}}
−
{{#set: in pathway=PWY0-461|PWY-5468|PWY-6381|PWY0-1303|PWY-6328|PWY-6375|PWY-6376}}
+
{{#set: common name=dihydrolipoamide_acetyltransferase}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: common name=ORF}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: gene associated=Tiso_gene_7519|Tiso_gene_17539|Tiso_gene_6983|Tiso_gene_11362|Tiso_gene_2515|Tiso_gene_2693}}
−
{{#set: reconstruction source=synechocystis}}
+
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 21:18, 21 March 2018

Reaction RXN-12583

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pyruvate:thiamin diphosphate acetaldehydetransferase (decarboxylating)
    • pyruvate_dehydrogenase_e1_component_subunit_alpha-_mitochondrial
    • dihydrolipoamide_acetyltransferase
    • ORF
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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