Difference between revisions of "RXN-9025"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYL-HOMO-CYS ADENOSYL-HOMO-CYS] == * smiles: ** C(SCC3(C(O)C(O)C(N2(C1(N=CN=C(N)C=1N=C2)))...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9025 RXN-9025] == * direction: ** LEFT-TO-RIGHT * common name: ** thymidine_phosphorylase * ec...")
 
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[[Category:Metabolite]]
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[[Category:Reaction]]
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYL-HOMO-CYS ADENOSYL-HOMO-CYS] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9025 RXN-9025] ==
* smiles:
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* direction:
** C(SCC3(C(O)C(O)C(N2(C1(N=CN=C(N)C=1N=C2)))O3))CC(C([O-])=O)[N+]
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** LEFT-TO-RIGHT
* inchi key:
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** InChIKey=ZJUKTBDSGOFHSH-WFMPWKQPSA-N
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* common name:
 
* common name:
** S-adenosyl-L-homocysteine
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** thymidine_phosphorylase
* molecular weight:
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* ec number:
** 384.409   
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** [http://enzyme.expasy.org/EC/2.4.1.1 EC-2.4.1.1]
 
* Synonym(s):
 
* Synonym(s):
** S-adenosylhomocysteine
 
** 2-S-adenosyl-L-homocysteine
 
** AdoHcy
 
** S-adenosyl-homocysteine
 
** adenosyl-homo-cys
 
** adenosylhomocysteine
 
** adenosylhomo-cys
 
** SAH
 
  
== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
* [[ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN]]
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* With identifiers:
== Reaction(s) known to produce the compound ==
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** n [[Pi]][c] '''+''' 1 [[CPD0-1027]][c] '''=>''' n [[GLC-1-P]][c]
* [[RXN0-5063]]
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* With common name(s):
* [[RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN]]
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** n phosphate[c] '''+''' 1 a debranched α-limit dextrin[c] '''=>''' n α-D-glucopyranose 1-phosphate[c]
* [[RXN-14177]]
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* [[NICOTINAMIDE-N-METHYLTRANSFERASE-RXN]]
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== Genes associated with this reaction  ==
* [[2.1.1.137-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
* [[RXN-1104]]
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* Gene: [[Tiso_gene_1011]]
* [[RXN-2762]]
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** Source: [[annotation-in-silico_annotation]]
* [[2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN]]
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*** Assignment: EC-NUMBER
* [[HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN]]
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== Pathways  ==
* [[RXN-1143]]
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* [[PWY-5941]], glycogen degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5941 PWY-5941]
* [[QUERCETIN-3-O-METHYLTRANSFERASE-RXN]]
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** '''3''' reactions found over '''6''' reactions in the full pathway
* [[2.1.1.109-RXN]]
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* [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]
* [[UROPORIIIMETHYLTRANSA-RXN]]
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** '''6''' reactions found over '''8''' reactions in the full pathway
* [[RXN-10847]]
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== Reconstruction information  ==
* [[2-OCTAPRENYL-6-OHPHENOL-METHY-RXN]]
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* Category: [[annotation]]
* [[RXN-12375]]
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** Source: [[annotation-in-silico_annotation]]
* [[DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN]]
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*** Tool: [[pathwaytools]]
* [[HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN]]
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* [[RXN-11046]]
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* [[RXN1G-2544]]
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* [[RXN-2542]]
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* [[RXN-11374]]
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* [[RXN-11373]]
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* [[RXN-11370]]
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* [[RXN-13403]]
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* [[MRNA-GUANINE-N7--METHYLTRANSFERASE-RXN]]
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* [[RXN-9500]]
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* [[RXN-13406]]
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* [[TOCOPHEROL-O-METHYLTRANSFERASE-RXN]]
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* [[RXN1G-3641]]
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* [[RXN-3422]]
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* [[RXN-12377]]
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* [[2.1.1.138-RXN]]
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* [[2.1.1.113-RXN]]
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* [[RXN-12376]]
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* [[2.1.1.143-RXN]]
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* [[TRNA-URACIL-5--METHYLTRANSFERASE-RXN]]
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* [[RXN-7605]]
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* [[TRNA-GUANINE-N7--METHYLTRANSFERASE-RXN]]
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* [[RXN-13935]]
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* [[RXN0-5144]]
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* [[RXN-14326]]
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* [[DHHB-METHYLTRANSFER-RXN]]
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* [[RXN-2562]]
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* [[RXN0-6515]]
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* [[CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN]]
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* [[2.1.1.127-RXN]]
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* [[RXN0-5419]]
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* [[R06859]]
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* [[RXN-12459]]
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* [[RXN-9235]]
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* [[RXN-11856]]
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* [[RXN-12348]]
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* [[2.1.1.77-RXN]]
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* [[2.1.1.79-RXN]]
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* [[RXN-11637]]
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* [[RXN-14481]]
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* [[RXN-13588]]
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* [[RXN-11633]]
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* [[RXN-4021]]
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* [[RXN-11201]]
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* [[RXN-11574]]
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* [[RXN-11598]]
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* [[RXN-8675]]
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* [[RXN-14917]]
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* [[RXN-11638]]
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== Reaction(s) of unknown directionality ==
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* [[ADENOSYLHOMOCYSTEINASE-RXN]]
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* [[AMETt2h]]
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* [[AMETt2m]]
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== External links  ==
 
== External links  ==
* CAS : 979-92-0
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{{#set: direction=LEFT-TO-RIGHT}}
* METABOLIGHTS : MTBLC57856
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{{#set: common name=thymidine_phosphorylase}}
* PUBCHEM:
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{{#set: ec number=EC-2.4.1.1}}
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25246222 25246222]
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{{#set: gene associated=Tiso_gene_1011}}
* HMDB : HMDB00939
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{{#set: in pathway=PWY-5941|GLYCOCAT-PWY}}
* LIGAND-CPD:
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{{#set: reconstruction category=annotation}}
** [http://www.genome.jp/dbget-bin/www_bget?C00021 C00021]
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{{#set: reconstruction source=annotation-in-silico_annotation}}
* CHEBI:
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{{#set: reconstruction tool=pathwaytools}}
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57856 57856]
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* BIGG : ahcys
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{{#set: smiles=C(SCC3(C(O)C(O)C(N2(C1(N=CN=C(N)C=1N=C2)))O3))CC(C([O-])=O)[N+]}}
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{{#set: inchi key=InChIKey=ZJUKTBDSGOFHSH-WFMPWKQPSA-N}}
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{{#set: common name=S-adenosyl-L-homocysteine}}
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{{#set: molecular weight=384.409    }}
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{{#set: common name=S-adenosylhomocysteine|2-S-adenosyl-L-homocysteine|AdoHcy|S-adenosyl-homocysteine|adenosyl-homo-cys|adenosylhomocysteine|adenosylhomo-cys|SAH}}
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{{#set: consumed by=ADENOSYLHOMOCYSTEINE-NUCLEOSIDASE-RXN}}
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{{#set: produced by=RXN0-5063|RXN-MG-PROTOPORPHYRIN-METHYLESTER-SYN|RXN-14177|NICOTINAMIDE-N-METHYLTRANSFERASE-RXN|2.1.1.137-RXN|RXN-1104|RXN-2762|2-OCTAPRENYL-METHOXY-BENZOQ-METH-RXN|HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN|RXN-1143|QUERCETIN-3-O-METHYLTRANSFERASE-RXN|2.1.1.109-RXN|UROPORIIIMETHYLTRANSA-RXN|RXN-10847|2-OCTAPRENYL-6-OHPHENOL-METHY-RXN|RXN-12375|DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN|HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN|RXN-11046|RXN1G-2544|RXN-2542|RXN-11374|RXN-11373|RXN-11370|RXN-13403|MRNA-GUANINE-N7--METHYLTRANSFERASE-RXN|RXN-9500|RXN-13406|TOCOPHEROL-O-METHYLTRANSFERASE-RXN|RXN1G-3641|RXN-3422|RXN-12377|2.1.1.138-RXN|2.1.1.113-RXN|RXN-12376|2.1.1.143-RXN|TRNA-URACIL-5--METHYLTRANSFERASE-RXN|RXN-7605|TRNA-GUANINE-N7--METHYLTRANSFERASE-RXN|RXN-13935|RXN0-5144|RXN-14326|DHHB-METHYLTRANSFER-RXN|RXN-2562|RXN0-6515|CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN|2.1.1.127-RXN|RXN0-5419|R06859|RXN-12459|RXN-9235|RXN-11856|RXN-12348|2.1.1.77-RXN|2.1.1.79-RXN|RXN-11637|RXN-14481|RXN-13588|RXN-11633|RXN-4021|RXN-11201|RXN-11574|RXN-11598|RXN-8675|RXN-14917|RXN-11638}}
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{{#set: consumed or produced by=ADENOSYLHOMOCYSTEINASE-RXN|AMETt2h|AMETt2m}}
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Latest revision as of 20:20, 21 March 2018

Reaction RXN-9025

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • thymidine_phosphorylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • n phosphate[c] + 1 a debranched α-limit dextrin[c] => n α-D-glucopyranose 1-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5941, glycogen degradation II: PWY-5941
    • 3 reactions found over 6 reactions in the full pathway
  • GLYCOCAT-PWY, glycogen degradation I: GLYCOCAT-PWY
    • 6 reactions found over 8 reactions in the full pathway

Reconstruction information

External links