Difference between revisions of "Tiso gene 3359"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10855 RXN-10855] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** ORF...")
 
(Created page with "Category:Gene == Gene Tiso_gene_3359 == * right end position: ** 16461 * transcription direction: ** NEGATIVE * left end position: ** 15139 * centisome position: ** 89.484...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10855 RXN-10855] ==
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== Gene Tiso_gene_3359 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 16461
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* common name:
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* transcription direction:
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** polyketide_synthase
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** NEGATIVE
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** ORF
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* left end position:
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** 15139
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* centisome position:
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** 89.48457   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[5-OXOPROLINASE-ATP-HYDROLYSING-RXN]]
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** 1 [[CPD-7682]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[CPD-468]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 (S)-2,3,4,5-tetrahydropiperidine-2-carboxylate[c] '''+''' 1 NAD(P)+[c] '''+''' 2 H2O[c] '''=>''' 1 L-2-aminoadipate[c] '''+''' 1 NAD(P)H[c] '''+''' 1 H+[c]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_5425]]
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* [[PWY-4041]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5424]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16719]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6562]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6563]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY66-425]], L-lysine degradation II (L-pipecolate pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-425 PWY66-425]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=16461}}
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{{#set: common name=polyketide_synthase}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=ORF}}
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{{#set: left end position=15139}}
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{{#set: gene associated=Tiso_gene_5425|Tiso_gene_5424|Tiso_gene_16719|Tiso_gene_6562|Tiso_gene_6563}}
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{{#set: centisome position=89.48457    }}
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{{#set: in pathway=PWY66-425}}
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{{#set: reaction associated=5-OXOPROLINASE-ATP-HYDROLYSING-RXN}}
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{{#set: reconstruction category=annotation}}
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{{#set: pathway associated=PWY-4041}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:20, 21 March 2018

Gene Tiso_gene_3359

  • right end position:
    • 16461
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 15139
  • centisome position:
    • 89.48457
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3359&oldid=47892"