Difference between revisions of "Tiso gene 14485"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEAMINASE-RXN AMP-DEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** amp_deamina...")
 
(Created page with "Category:Gene == Gene Tiso_gene_14485 == * right end position: ** 5579 * transcription direction: ** NEGATIVE * left end position: ** 2851 * centisome position: ** 50.7747...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AMP-DEAMINASE-RXN AMP-DEAMINASE-RXN] ==
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== Gene Tiso_gene_14485 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5579
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* common name:
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* transcription direction:
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** amp_deaminase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/3.5.4.17 EC-3.5.4.17]
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** 2851
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** [http://enzyme.expasy.org/EC/3.5.4.6 EC-3.5.4.6]
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* centisome position:
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** 50.77471   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2.3.1.179-RXN]]
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** 1 [[AMP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[IMP]][c] '''+''' 1 [[AMMONIUM]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 AMP[c] '''+''' 1 H2O[c] '''+''' 1 H+[c] '''=>''' 1 IMP[c] '''+''' 1 ammonium[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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* Reaction: [[2.3.1.41-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-esiliculosus]]
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* [[Tiso_gene_1778]]
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* Reaction: [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
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** IN-SILICO_ANNOTATION
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** Source: [[orthology-synechocystis]]
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***EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[3-OXOACYL-ACP-SYNTH-RXN]]
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== Pathways  ==
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** Source: [[orthology-esiliculosus]]
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* [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596]
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* Reaction: [[RXN-10059]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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** Source: [[orthology-esiliculosus]]
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== Reconstruction information  ==
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* Reaction: [[RXN-10654]]
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* [[orthology]]:
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]:
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* Reaction: [[RXN-10658]]
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*** [[esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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* [[annotation]]:
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* Reaction: [[RXN-11474]]
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** [[pathwaytools]]:
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** Source: [[orthology-esiliculosus]]
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*** [[in-silico_annotation]]
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* Reaction: [[RXN-11479]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-8391]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-9516]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9523]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9527]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9531]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9535]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9539]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9632]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9648]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9650]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9651]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9652]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9653]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-9654]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-1003]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-132]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-138]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-218]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-236]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-26]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-306]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-324]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-368]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-445]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-460]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-499]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN1G-840]]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN3O-1803]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[PWY-6113]]
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* [[FASYN-ELONG-PWY]]
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* [[PWY-6519]]
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* [[PWY-7388]]
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* [[PWY-5367]]
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* [[PWY-5971]]
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* [[PWY-6282]]
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* [[PWY-5965]]
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* [[PWY-5973]]
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* [[PWY-5989]]
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* [[PWY-5966]]
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* [[PWYG-321]]
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* [[FASYN-INITIAL-PWY]]
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* [[PWY-5994]]
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* [[PWY3O-355]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5579}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14777 14777]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=2851}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00181 R00181]
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{{#set: centisome position=50.77471    }}
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* UNIPROT:
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{{#set: reaction associated=2.3.1.179-RXN|2.3.1.41-RXN|3-OXOACYL-ACP-SYNTH-BASE-RXN|3-OXOACYL-ACP-SYNTH-RXN|RXN-10059|RXN-10654|RXN-10658|RXN-11474|RXN-11479|RXN-8391|RXN-9516|RXN-9523|RXN-9527|RXN-9531|RXN-9535|RXN-9539|RXN-9632|RXN-9648|RXN-9650|RXN-9651|RXN-9652|RXN-9653|RXN-9654|RXN1G-1003|RXN1G-132|RXN1G-138|RXN1G-218|RXN1G-236|RXN1G-26|RXN1G-306|RXN1G-324|RXN1G-368|RXN1G-445|RXN1G-460|RXN1G-499|RXN1G-840|RXN3O-1803}}
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** [http://www.uniprot.org/uniprot/P10759 P10759]
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{{#set: pathway associated=PWY-6113|FASYN-ELONG-PWY|PWY-6519|PWY-7388|PWY-5367|PWY-5971|PWY-6282|PWY-5965|PWY-5973|PWY-5989|PWY-5966|PWYG-321|FASYN-INITIAL-PWY|PWY-5994|PWY3O-355}}
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** [http://www.uniprot.org/uniprot/Q02356 Q02356]
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** [http://www.uniprot.org/uniprot/P23109 P23109]
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** [http://www.uniprot.org/uniprot/P15274 P15274]
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** [http://www.uniprot.org/uniprot/Q7M3H8 Q7M3H8]
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** [http://www.uniprot.org/uniprot/Q01433 Q01433]
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** [http://www.uniprot.org/uniprot/Q01432 Q01432]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=amp_deaminase}}
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{{#set: ec number=EC-3.5.4.17}}
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{{#set: ec number=EC-3.5.4.6}}
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{{#set: gene associated=Tiso_gene_1778}}
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{{#set: in pathway=PWY-6596}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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−
{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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−
{{#set: reconstruction tool=pathwaytools}}
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−
{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:20, 21 March 2018

Gene Tiso_gene_14485

  • right end position:
    • 5579
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 2851
  • centisome position:
    • 50.77471
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_14485&oldid=47988"