Difference between revisions of "RXN-12198"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXPREDISOM-RXN DXPREDISOM-RXN] == * direction: ** REVERSIBLE * common name: ** 1-deoxy-d-xylulose_5...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12198 RXN-12198] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http:/...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXPREDISOM-RXN DXPREDISOM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12198 RXN-12198] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 1-deoxy-d-xylulose_5-phosphate_reductoisomerase
+
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.267 EC-1.1.1.267]
+
** [http://enzyme.expasy.org/EC/3.6.1.6 EC-3.6.1.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[NADPH]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CDP]][c] '''=>''' 1 [[CMP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 2-C-methyl-D-erythritol 4-phosphate[c] '''+''' 1 NADP+[c] '''<=>''' 1 H+[c] '''+''' 1 1-deoxy-D-xylulose 5-phosphate[c] '''+''' 1 NADPH[c]
+
** 1 H2O[c] '''+''' 1 CDP[c] '''=>''' 1 CMP[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15169]]
+
* Gene: [[Tiso_gene_20236]]
−
** IN-SILICO_ANNOTATION
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** Source: [[orthology-esiliculosus]]
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***EC-NUMBER
+
* Gene: [[Tiso_gene_12899]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
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*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
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** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[synechocystis]]
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*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-creinhardtii]]
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-creinhardtii]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[synechocystis]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[athaliana]]
+
*** Tool: [[pantograph]]
−
*** [[esiliculosus]]
+
* Category: [[annotation]]
−
* [[manual]]:
+
** Source: [[annotation-in-silico_annotation]]
−
** [[primary_network]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
** Source: [[annotation-experimental_annotation]]
−
** [[pathwaytools]]:
+
*** Tool: [[pathwaytools]]
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13717 13717]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05688 R05688]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00514 R00514]
−
{{#set: direction=REVERSIBLE}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=1-deoxy-d-xylulose_5-phosphate_reductoisomerase}}
+
{{#set: common name=ORF}}
−
{{#set: ec number=EC-1.1.1.267}}
+
{{#set: ec number=EC-3.6.1.6}}
−
{{#set: gene associated=Tiso_gene_15169}}
+
{{#set: gene associated=Tiso_gene_20236|Tiso_gene_12899}}
−
{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:21, 21 March 2018

Reaction RXN-12198

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 CDP[c] => 1 CMP[c] + 1 H+[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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