Difference between revisions of "Tiso gene 9435"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATPSYN-RXN ATPSYN-RXN] == * direction: ** REVERSIBLE * common name: ** v-type_proton_atpase ** ORF...")
 
(Created page with "Category:Gene == Gene Tiso_gene_9435 == * right end position: ** 8586 * transcription direction: ** POSITIVE * left end position: ** 5578 * centisome position: ** 59.63224...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ATPSYN-RXN ATPSYN-RXN] ==
+
== Gene Tiso_gene_9435 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 8586
−
* common name:
+
* transcription direction:
−
** v-type_proton_atpase
+
** POSITIVE
−
** ORF
+
* left end position:
−
** vacuolar_h+-_sector_c
+
** 5578
−
** v-type_proton_atpase_catalytic_subunit_a
+
* centisome position:
−
** vacuolar_h+-atpase_v0_subunits_a
+
** 59.63224   
−
** atp_synthase_gamma_chloroplastic
+
−
** atp_synthase_gamma_subunit
+
−
** atp_synthase_subunit_mitochondrial
+
−
** ycf35
+
−
** atp_synthase_delta_mitochondrial
+
−
** v-type_proton_atpase_subunit_h
+
−
** v-type_protonatpasesubunitd1
+
−
* ec number:
+
−
** [http://enzyme.expasy.org/EC/3.6.3.14 EC-3.6.3.14]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[F16BDEPHOS-RXN]]
−
** 1 [[Pi]][c] '''+''' 4 [[PROTON]][e] '''+''' 1 [[ADP]][c] '''<=>''' 1 [[WATER]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[ATP]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 phosphate[c] '''+''' 4 H+[e] '''+''' 1 ADP[c] '''<=>''' 1 H2O[c] '''+''' 3 H+[c] '''+''' 1 ATP[c]
+
** Source: [[annotation-experimental_annotation]]
−
 
+
*** Assignment: ec-number
−
== Genes associated with this reaction  ==
+
** Source: [[orthology-athaliana]]
−
Genes have been associated with this reaction based on different elements listed below.
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_11754]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
* Reaction: [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_9460]]
+
== Pathways associated ==
−
** IN-SILICO_ANNOTATION
+
* [[GLUCONEO-PWY]]
−
***EC-NUMBER
+
* [[SUCSYN-PWY]]
−
** EXPERIMENTAL_ANNOTATION
+
* [[GLYCOLYSIS]]
−
***EC-NUMBER
+
* [[CALVIN-PWY]]
−
* [[Tiso_gene_12618]]
+
* [[PWY-5484]]
−
** IN-SILICO_ANNOTATION
+
* [[P185-PWY]]
−
***AUTOMATED-NAME-MATCH
+
* [[PWY66-399]]
−
* [[Tiso_gene_18105]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11192]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5307]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15850]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1366]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_7213]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10981]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2798]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1365]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17383]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_7215]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11753]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11155]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6012]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6592]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways ==
+
−
* [[PWY-7219]], adenosine ribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7219 PWY-7219]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=8586}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20852 20852]
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: left end position=5578}}
−
{{#set: common name=v-type_proton_atpase}}
+
{{#set: centisome position=59.63224    }}
−
{{#set: common name=ORF}}
+
{{#set: reaction associated=F16BDEPHOS-RXN|SEDOHEPTULOSE-BISPHOSPHATASE-RXN}}
−
{{#set: common name=vacuolar_h+-_sector_c}}
+
{{#set: pathway associated=GLUCONEO-PWY|SUCSYN-PWY|GLYCOLYSIS|CALVIN-PWY|PWY-5484|P185-PWY|PWY66-399}}
−
{{#set: common name=v-type_proton_atpase_catalytic_subunit_a}}
+
−
{{#set: common name=vacuolar_h+-atpase_v0_subunits_a}}
+
−
{{#set: common name=atp_synthase_gamma_chloroplastic}}
+
−
{{#set: common name=atp_synthase_gamma_subunit}}
+
−
{{#set: common name=atp_synthase_subunit_mitochondrial}}
+
−
{{#set: common name=ycf35}}
+
−
{{#set: common name=atp_synthase_delta_mitochondrial}}
+
−
{{#set: common name=v-type_proton_atpase_subunit_h}}
+
−
{{#set: common name=v-type_protonatpasesubunitd1}}
+
−
{{#set: ec number=EC-3.6.3.14}}
+
−
{{#set: gene associated=Tiso_gene_11754|Tiso_gene_9460|Tiso_gene_12618|Tiso_gene_18105|Tiso_gene_11192|Tiso_gene_5307|Tiso_gene_15850|Tiso_gene_1366|Tiso_gene_7213|Tiso_gene_10981|Tiso_gene_2798|Tiso_gene_1365|Tiso_gene_17383|Tiso_gene_7215|Tiso_gene_11753|Tiso_gene_11155|Tiso_gene_6012|Tiso_gene_6592}}
+
−
{{#set: in pathway=PWY-7219}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 21:21, 21 March 2018

Gene Tiso_gene_9435

  • right end position:
    • 8586
  • transcription direction:
    • POSITIVE
  • left end position:
    • 5578
  • centisome position:
    • 59.63224
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_9435&oldid=48056"