Difference between revisions of "4.2.99.18-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=tRNA-Introns tRNA-Introns] == * common name: ** a tRNA intron with a 2',3'-cyclic phosphate and...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=tRNA-Introns tRNA-Introns] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.99.18-RXN 4.2.99.18-RXN] ==
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* direction:
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus
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** formamidopyrimidine-dna_glycosylase
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** endonuclease_iii
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** dna-(apurinic_or_apyrimidinic_site)_lyase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[3.1.27.9-RXN]]
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** 1 [[DNA-containing-abasic-Sites]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[5-Phospho-terminated-DNAs]][c] '''+''' 1 [[3-terminal-unsaturated-sugars]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 a DNA containing an apurinic/apyrimidinic site[c] '''=>''' 1 H+[c] '''+''' 1 a 5'-phospho-[DNA][c] '''+''' 1 a 3'-terminal unsaturated sugar[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_6558]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_5102]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_17380]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_14609]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_1280]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: common name=a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus}}
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* UNIPROT:
−
{{#set: produced by=3.1.27.9-RXN}}
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** [http://www.uniprot.org/uniprot/P0AB83 P0AB83]
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** [http://www.uniprot.org/uniprot/P28352 P28352]
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** [http://www.uniprot.org/uniprot/Q58829 Q58829]
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** [http://www.uniprot.org/uniprot/Q9PHS1 Q9PHS1]
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** [http://www.uniprot.org/uniprot/Q9JVT0 Q9JVT0]
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** [http://www.uniprot.org/uniprot/Q9PNL1 Q9PNL1]
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** [http://www.uniprot.org/uniprot/P44319 P44319]
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** [http://www.uniprot.org/uniprot/Q9CGM5 Q9CGM5]
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** [http://www.uniprot.org/uniprot/P04418 P04418]
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** [http://www.uniprot.org/uniprot/P27695 P27695]
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** [http://www.uniprot.org/uniprot/P23196 P23196]
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** [http://www.uniprot.org/uniprot/P22936 P22936]
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** [http://www.uniprot.org/uniprot/P43138 P43138]
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** [http://www.uniprot.org/uniprot/P95945 P95945]
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** [http://www.uniprot.org/uniprot/P50525 P50525]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=formamidopyrimidine-dna_glycosylase}}
 +
{{#set: common name=endonuclease_iii}}
 +
{{#set: common name=dna-(apurinic_or_apyrimidinic_site)_lyase}}
 +
{{#set: ec number=EC-4.2.99.18}}
 +
{{#set: gene associated=Tiso_gene_6558|Tiso_gene_5102|Tiso_gene_17380|Tiso_gene_14609|Tiso_gene_1280}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:21, 21 March 2018

Reaction 4.2.99.18-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • formamidopyrimidine-dna_glycosylase
    • endonuclease_iii
    • dna-(apurinic_or_apyrimidinic_site)_lyase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links






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