Difference between revisions of "Tiso gene 18196"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TIGLYLCOA-HYDROXY-RXN TIGLYLCOA-HYDROXY-RXN] == * direction: ** REVERSIBLE * common name: ** Tiglyl...")
 
(Created page with "Category:Gene == Gene Tiso_gene_18196 == * right end position: ** 450 * transcription direction: ** POSITIVE * left end position: ** 127 * centisome position: ** 3.9874413...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TIGLYLCOA-HYDROXY-RXN TIGLYLCOA-HYDROXY-RXN] ==
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== Gene Tiso_gene_18196 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 450
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* common name:
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* transcription direction:
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** Tiglyl-CoA hydratase
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
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** 127
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* centisome position:
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** 3.9874413   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[2.4.1.213-RXN]]
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** 1 [[2-METHYL-3-HYDROXY-BUTYRYL-COA]][c] '''<=>''' 1 [[CPD-1083]][c] '''+''' 1 [[WATER]][c]
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** Source: [[orthology-synechocystis]]
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* With common name(s):
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* Reaction: [[TREHALOSE6PSYN-RXN]]
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** 1 (2S,3S)-3-hydroxy-2-methylbutanoyl-CoA[c] '''<=>''' 1 (E)-2-methylcrotonoyl-CoA[c] '''+''' 1 H2O[c]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: automated-name-match
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== Genes associated with this reaction  ==
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** Source: [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[TREHALOSEPHOSPHA-RXN]]
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* [[Tiso_gene_14257]]
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[UG6PGT]]
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* [[Tiso_gene_14262]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[UG6PGTn]]
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* [[Tiso_gene_5857]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[athaliana]]
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== Pathways associated ==
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** [[pantograph]]-[[esiliculosus]]
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* [[TREHALOSESYN-PWY]]
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* [[Tiso_gene_16145]]
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* [[PWY-881]]
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** [[pantograph]]-[[esiliculosus]]
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* [[TRESYN-PWY]]
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* [[Tiso_gene_6885]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[PWY-5109]], 2-methylbutanoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5109 PWY-5109]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[ILEUDEG-PWY]], L-isoleucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ILEUDEG-PWY ILEUDEG-PWY]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[athaliana]]
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*** [[esiliculosus]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=450}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31119 31119]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=127}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04204 R04204]
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{{#set: centisome position=3.9874413    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=2.4.1.213-RXN|TREHALOSE6PSYN-RXN|TREHALOSEPHOSPHA-RXN|UG6PGT|UG6PGTn}}
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{{#set: common name=Tiglyl-CoA hydratase}}
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{{#set: pathway associated=TREHALOSESYN-PWY|PWY-881|TRESYN-PWY}}
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{{#set: ec number=EC-4.2.1.17}}
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{{#set: gene associated=Tiso_gene_14257|Tiso_gene_14262|Tiso_gene_5857|Tiso_gene_16145|Tiso_gene_6885}}
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{{#set: in pathway=PWY-5109|ILEUDEG-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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Latest revision as of 21:22, 21 March 2018

Gene Tiso_gene_18196

  • right end position:
    • 450
  • transcription direction:
    • POSITIVE
  • left end position:
    • 127
  • centisome position:
    • 3.9874413
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18196&oldid=48161"