Difference between revisions of "Tiso gene 18196"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TIGLYLCOA-HYDROXY-RXN TIGLYLCOA-HYDROXY-RXN] == * direction: ** REVERSIBLE * common name: ** Tiglyl...")
 
(Created page with "Category:Gene == Gene Tiso_gene_18196 == * right end position: ** 450 * transcription direction: ** POSITIVE * left end position: ** 127 * centisome position: ** 3.9874413...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TIGLYLCOA-HYDROXY-RXN TIGLYLCOA-HYDROXY-RXN] ==
+
== Gene Tiso_gene_18196 ==
−
* direction:
+
* right end position:
−
** REVERSIBLE
+
** 450
−
* common name:
+
* transcription direction:
−
** Tiglyl-CoA hydratase
+
** POSITIVE
−
* ec number:
+
* left end position:
−
** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
+
** 127
 +
* centisome position:
 +
** 3.9874413   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[2.4.1.213-RXN]]
−
** 1 [[2-METHYL-3-HYDROXY-BUTYRYL-COA]][c] '''<=>''' 1 [[CPD-1083]][c] '''+''' 1 [[WATER]][c]
+
** Source: [[orthology-synechocystis]]
−
* With common name(s):
+
* Reaction: [[TREHALOSE6PSYN-RXN]]
−
** 1 (2S,3S)-3-hydroxy-2-methylbutanoyl-CoA[c] '''<=>''' 1 (E)-2-methylcrotonoyl-CoA[c] '''+''' 1 H2O[c]
+
** Source: [[annotation-in-silico_annotation]]
−
 
+
*** Assignment: automated-name-match
−
== Genes associated with this reaction  ==
+
** Source: [[orthology-esiliculosus]]
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[TREHALOSEPHOSPHA-RXN]]
−
* [[Tiso_gene_14257]]
+
** Source: [[orthology-athaliana]]
−
** [[pantograph]]-[[esiliculosus]]
+
* Reaction: [[UG6PGT]]
−
* [[Tiso_gene_14262]]
+
** Source: [[orthology-creinhardtii]]
−
** [[pantograph]]-[[esiliculosus]]
+
* Reaction: [[UG6PGTn]]
−
* [[Tiso_gene_5857]]
+
** Source: [[orthology-creinhardtii]]
−
** [[pantograph]]-[[athaliana]]
+
== Pathways associated ==
−
** [[pantograph]]-[[esiliculosus]]
+
* [[TREHALOSESYN-PWY]]
−
* [[Tiso_gene_16145]]
+
* [[PWY-881]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[TRESYN-PWY]]
−
* [[Tiso_gene_6885]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways ==
+
−
* [[PWY-5109]], 2-methylbutanoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5109 PWY-5109]
+
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
−
* [[ILEUDEG-PWY]], L-isoleucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ILEUDEG-PWY ILEUDEG-PWY]
+
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[athaliana]]
+
−
*** [[esiliculosus]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: right end position=450}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31119 31119]
+
{{#set: transcription direction=POSITIVE}}
−
* LIGAND-RXN:
+
{{#set: left end position=127}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R04204 R04204]
+
{{#set: centisome position=3.9874413    }}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: reaction associated=2.4.1.213-RXN|TREHALOSE6PSYN-RXN|TREHALOSEPHOSPHA-RXN|UG6PGT|UG6PGTn}}
−
{{#set: common name=Tiglyl-CoA hydratase}}
+
{{#set: pathway associated=TREHALOSESYN-PWY|PWY-881|TRESYN-PWY}}
−
{{#set: ec number=EC-4.2.1.17}}
+
−
{{#set: gene associated=Tiso_gene_14257|Tiso_gene_14262|Tiso_gene_5857|Tiso_gene_16145|Tiso_gene_6885}}
+
−
{{#set: in pathway=PWY-5109|ILEUDEG-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=athaliana|esiliculosus}}
+

Latest revision as of 20:22, 21 March 2018

Gene Tiso_gene_18196

  • right end position:
    • 450
  • transcription direction:
    • POSITIVE
  • left end position:
    • 127
  • centisome position:
    • 3.9874413
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18196&oldid=48161"