Difference between revisions of "Tiso gene 4247"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11476 RXN-11476] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-glutaryl-[acp] methyl...")
 
(Created page with "Category:Gene == Gene Tiso_gene_4247 == * right end position: ** 7048 * transcription direction: ** NEGATIVE * left end position: ** 5013 * centisome position: ** 33.10877...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11476 RXN-11476] ==
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== Gene Tiso_gene_4247 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 7048
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* common name:
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* transcription direction:
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** 3-oxo-glutaryl-[acp] methyl ester reductase
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** NEGATIVE
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** 3-oxoacyl-(acyl-carrier-protein)
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* left end position:
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* ec number:
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** 5013
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** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
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* centisome position:
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** 33.108776   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.4.11.18-RXN]]
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** 1 [[3-Ketoglutaryl-ACP-methyl-ester]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[3-Hydroxyglutaryl-ACP-methyl-ester]][c] '''+''' 1 [[NADP]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 a 3-oxo-glutaryl-[acp] methyl ester[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 a (3R)-3-hydroxyglutaryl-[acp] methyl ester[c] '''+''' 1 NADP+[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-17873]]
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== Genes associated with this reaction  ==
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** Source: [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: automated-name-match
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* [[Tiso_gene_13083]]
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* Reaction: [[RXN-17874]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: automated-name-match
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** EXPERIMENTAL_ANNOTATION
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* Reaction: [[RXN-17875]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: automated-name-match
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* [[Tiso_gene_9885]]
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* Reaction: [[RXN-17876]]
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** EXPERIMENTAL_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: automated-name-match
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== Pathways  ==
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* Reaction: [[RXN-17877]]
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* [[PWY-6519]], 8-amino-7-oxononanoate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6519 PWY-6519]
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** Source: [[annotation-in-silico_annotation]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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*** Assignment: automated-name-match
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== Reconstruction information  ==
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* Reaction: [[RXN-17878]]
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* [[orthology]]:
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]:
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*** Assignment: automated-name-match
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*** [[esiliculosus]]
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== Pathways associated ==
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* [[annotation]]:
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* [[PWY-7799]]
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** [[pathwaytools]]:
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* [[PWY-7800]]
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=7048}}
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{{#set: common name=3-oxo-glutaryl-[acp] methyl ester reductase}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
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{{#set: left end position=5013}}
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{{#set: ec number=EC-1.1.1.100}}
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{{#set: centisome position=33.108776    }}
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{{#set: gene associated=Tiso_gene_13083|Tiso_gene_9885}}
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{{#set: reaction associated=3.4.11.18-RXN|RXN-17873|RXN-17874|RXN-17875|RXN-17876|RXN-17877|RXN-17878}}
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{{#set: in pathway=PWY-6519}}
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{{#set: pathway associated=PWY-7799|PWY-7800}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:22, 21 March 2018

Gene Tiso_gene_4247

  • right end position:
    • 7048
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 5013
  • centisome position:
    • 33.108776
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4247&oldid=48253"