Difference between revisions of "Tiso gene 10888"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMATETHFLIG-RXN FORMATETHFLIG-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzym...")
 
(Created page with "Category:Gene == Gene Tiso_gene_10888 == * right end position: ** 1451 * transcription direction: ** POSITIVE * left end position: ** 415 * centisome position: ** 5.049890...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FORMATETHFLIG-RXN FORMATETHFLIG-RXN] ==
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== Gene Tiso_gene_10888 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1451
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/6.3.4.3 EC-6.3.4.3]
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** POSITIVE
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* left end position:
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** 415
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* centisome position:
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** 5.0498905   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-15556]]
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** 1 [[ATP]][c] '''+''' 1 [[THF-GLU-N]][c] '''+''' 1 [[FORMATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[Pi]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 ATP[c] '''+''' 1 a tetrahydrofolate[c] '''+''' 1 formate[c] '''=>''' 1 ADP[c] '''+''' 1 an N10-formyl-tetrahydrofolate[c] '''+''' 1 phosphate[c]
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* Reaction: [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_7582]]
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* [[PWY-7511]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_432]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
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** '''7''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1722 PWY-1722]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-2161]], folate polyglutamylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2161 PWY-2161]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=1451}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20221 20221]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=415}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00943 R00943]
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{{#set: centisome position=5.0498905    }}
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* UNIPROT:
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{{#set: reaction associated=RXN-15556|UBIQUITIN--PROTEIN-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/P09440 P09440]
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{{#set: pathway associated=PWY-7511}}
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** [http://www.uniprot.org/uniprot/P13419 P13419]
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** [http://www.uniprot.org/uniprot/P07245 P07245]
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** [http://www.uniprot.org/uniprot/P11586 P11586]
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** [http://www.uniprot.org/uniprot/P21164 P21164]
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** [http://www.uniprot.org/uniprot/P28723 P28723]
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** [http://www.uniprot.org/uniprot/Q9JVY8 Q9JVY8]
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** [http://www.uniprot.org/uniprot/Q9CH07 Q9CH07]
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** [http://www.uniprot.org/uniprot/Q07064 Q07064]
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** [http://www.uniprot.org/uniprot/Q27772 Q27772]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-6.3.4.3}}
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{{#set: gene associated=Tiso_gene_7582|Tiso_gene_432}}
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{{#set: in pathway=PWY-2201|PWY-1722|PWY-2161|PWY-3841|CODH-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:12, 21 March 2018

Gene Tiso_gene_10888

  • right end position:
    • 1451
  • transcription direction:
    • POSITIVE
  • left end position:
    • 415
  • centisome position:
    • 5.0498905
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10888&oldid=40161"