Difference between revisions of "RXN0-2301"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.8-RXN 2.7.7.8-RXN] == * direction: ** REVERSIBLE * common name: ** polynucleotide_phosphoryla...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2301 RXN0-2301] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.8-RXN 2.7.7.8-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2301 RXN0-2301] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** polynucleotide_phosphorylase_polyadenylase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.7.8 EC-2.7.7.8]
+
** [http://enzyme.expasy.org/EC/1.3.8.4 EC-1.3.8.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ssRNAs]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[ssRNAs]][c] '''+''' 1 [[Nucleoside-Diphosphates]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[ISOVALERYL-COA]][c] '''=>''' 1 [[ETF-Reduced]][c] '''+''' 1 [[3-METHYL-CROTONYL-COA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a single-stranded RNA[c] '''+''' 1 phosphate[c] '''<=>''' 1 a single-stranded RNA[c] '''+''' 1 a nucleoside diphosphate[c]
+
** 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 isovaleryl-CoA[c] '''=>''' 1 a reduced electron-transfer flavoprotein[c] '''+''' 1 3-methylcrotonyl-CoA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_2987]]
+
* Gene: [[Tiso_gene_18542]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***AUTOMATED-NAME-MATCH
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12276 12276]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R07282 R07282]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04096 R04096]
−
* UNIPROT:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P44584 P44584]
+
{{#set: ec number=EC-1.3.8.4}}
−
** [http://www.uniprot.org/uniprot/Q9PN44 Q9PN44]
+
{{#set: gene associated=Tiso_gene_18542}}
−
** [http://www.uniprot.org/uniprot/P05055 P05055]
+
{{#set: in pathway=LEU-DEG2-PWY}}
−
** [http://www.uniprot.org/uniprot/Q9JV72 Q9JV72]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P41121 P41121]
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/P50849 P50849]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P72659 P72659]
+
−
** [http://www.uniprot.org/uniprot/O24288 O24288]
+
−
** [http://www.uniprot.org/uniprot/Q8CJQ6 Q8CJQ6]
+
−
** [http://www.uniprot.org/uniprot/O32966 O32966]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=polynucleotide_phosphorylase_polyadenylase}}
+
−
{{#set: ec number=EC-2.7.7.8}}
+
−
{{#set: gene associated=Tiso_gene_2987}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:23, 21 March 2018

Reaction RXN0-2301

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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