Difference between revisions of "Tiso gene 13929"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMINE-SYNTHASE-RXN SPERMINE-SYNTHASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http...")
 
(Created page with "Category:Gene == Gene Tiso_gene_13929 == * right end position: ** 5661 * transcription direction: ** POSITIVE * left end position: ** 3403 * centisome position: ** 57.1068...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SPERMINE-SYNTHASE-RXN SPERMINE-SYNTHASE-RXN] ==
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== Gene Tiso_gene_13929 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5661
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.5.1.22 EC-2.5.1.22]
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** POSITIVE
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* left end position:
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** 3403
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* centisome position:
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** 57.106895   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[5-NUCLEOTID-RXN]]
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** 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''+''' 1 [[SPERMIDINE]][c] '''=>''' 1 [[SPERMINE]][c] '''+''' 1 [[5-METHYLTHIOADENOSINE]][c] '''+''' 1 [[PROTON]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 S-adenosyl 3-(methylthio)propylamine[c] '''+''' 1 spermidine[c] '''=>''' 1 spermine[c] '''+''' 1 S-methyl-5'-thioadenosine[c] '''+''' 1 H+[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[AMP-DEPHOSPHORYLATION-RXN]]
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== Genes associated with this reaction  ==
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** Source: [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* [[Tiso_gene_17803]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-14025]]
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* [[Tiso_gene_17081]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* Reaction: [[RXN-14026]]
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* [[ARGSPECAT-PWY]], spermine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ARGSPECAT-PWY ARGSPECAT-PWY]
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** Source: [[annotation-in-silico_annotation]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** Assignment: ec-number
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* [[POLYAMINSYN3-PWY]], superpathway of polyamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=POLYAMINSYN3-PWY POLYAMINSYN3-PWY]
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** Source: [[orthology-esiliculosus]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* Reaction: [[RXN-14227]]
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== Reconstruction information  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[orthology]]:
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*** Assignment: ec-number
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** [[pantograph]]:
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** Source: [[orthology-esiliculosus]]
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*** [[creinhardtii]]
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* Reaction: [[RXN-5841]]
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*** [[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-7607]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[RXN-7609]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[XMPXAN-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[PWY-5381]]
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* [[PWY-6607]]
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* [[PWY-7185]]
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* [[PWY-7821]]
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* [[SALVADEHYPOX-PWY]]
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* [[PWY-6596]]
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* [[NAD-BIOSYNTHESIS-II]]
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* [[PWY-6606]]
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* [[PWY-6608]]
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* [[PWY-5695]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5661}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19973 19973]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3403}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02869 R02869]
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{{#set: centisome position=57.106895    }}
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* UNIPROT:
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{{#set: reaction associated=5-NUCLEOTID-RXN|AMP-DEPHOSPHORYLATION-RXN|RXN-14025|RXN-14026|RXN-14227|RXN-5841|RXN-7607|RXN-7609|XMPXAN-RXN}}
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** [http://www.uniprot.org/uniprot/P52788 P52788]
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{{#set: pathway associated=PWY-5381|PWY-6607|PWY-7185|PWY-7821|SALVADEHYPOX-PWY|PWY-6596|NAD-BIOSYNTHESIS-II|PWY-6606|PWY-6608|PWY-5695}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.5.1.22}}
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{{#set: gene associated=Tiso_gene_17803|Tiso_gene_17081}}
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{{#set: in pathway=ARGSPECAT-PWY|POLYAMINSYN3-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|esiliculosus}}
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Latest revision as of 20:23, 21 March 2018

Gene Tiso_gene_13929

  • right end position:
    • 5661
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3403
  • centisome position:
    • 57.106895
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_13929&oldid=48386"