Difference between revisions of "RXN-9650"

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(Created page with "Category:Gene == Gene Tiso_gene_12899 == * left end position: ** 3684 * transcription direction: ** NEGATIVE * right end position: ** 6537 * centisome position: ** 55.3984...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9650 RXN-9650] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_12899 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9650 RXN-9650] ==
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* left end position:
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* direction:
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** 3684
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** polyketide_synthase
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* right end position:
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** 3-oxoacyl-synthase
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** 6537
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** 55.398495   
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ADPA]]
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* With identifiers:
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** [[pantograph]]-[[creinhardtii]]
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** 1 [[Hexanoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-Oxo-octanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c]
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* [[APYRASE-RXN]]
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* With common name(s):
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** in-silico_annotation
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** 1 a hexanoyl-[acyl-carrier-protein][c] '''+''' 1 malonyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 a 3-oxo-octanoyl-[acp][c] '''+''' 1 CO2[c] '''+''' 1 coenzyme A[c]
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***ec-number
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** experimental_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* [[ATPASE-RXN]]
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* Gene: [[Tiso_gene_135]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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** experimental_annotation
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* Gene: [[Tiso_gene_14485]]
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***ec-number
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_136]]
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* [[ATPPH]]
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** Assignment: EC-NUMBER
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* [[CTPH]]
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* Gene: [[Tiso_gene_10876]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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* [[DTNH]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_19302]]
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* [[GDPA]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_15991]]
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* [[GTPA]]
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** Source: [[orthology-esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* Gene: [[Tiso_gene_13394]]
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* [[GUANOSINE-DIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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** in-silico_annotation
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*** Assignment: EC-NUMBER
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***ec-number
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* Gene: [[Tiso_gene_500]]
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** experimental_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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* Gene: [[Tiso_gene_5939]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[NUCLEOSIDE-DIPHOSPHATASE-RXN]]
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*** Assignment: EC-NUMBER
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** in-silico_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
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*** Assignment: EC-NUMBER
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** experimental_annotation
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== Pathways  ==
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***ec-number
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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** in-silico_annotation
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== Reconstruction information  ==
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***ec-number
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* Category: [[orthology]]
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** experimental_annotation
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** Source: [[orthology-esiliculosus]]
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***ec-number
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*** Tool: [[pantograph]]
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* [[RXN-10862]]
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* Category: [[annotation]]
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** in-silico_annotation
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** Source: [[annotation-experimental_annotation]]
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***ec-number
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*** Tool: [[pathwaytools]]
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** experimental_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Tool: [[pathwaytools]]
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** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN-12195]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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* [[RXN-12196]]
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** in-silico_annotation
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−
***ec-number
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** experimental_annotation
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−
***ec-number
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−
* [[RXN-12197]]
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** in-silico_annotation
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−
***ec-number
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** experimental_annotation
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−
***ec-number
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−
* [[RXN-12198]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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** [[pantograph]]-[[creinhardtii]]
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−
* [[RXN-12199]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-12200]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14003]]
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−
** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[creinhardtii]]
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−
* [[RXN-14024]]
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** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14187]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14195]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14198]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14199]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14200]]
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** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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* [[RXN-14201]]
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** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14205]]
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** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14208]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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* [[RXN-14213]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
** [[pantograph]]-[[creinhardtii]]
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−
* [[RXN-14214]]
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−
** in-silico_annotation
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−
***ec-number
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** experimental_annotation
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−
***ec-number
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−
* [[RXN-14215]]
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** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14216]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14217]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14218]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14219]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN-14220]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
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−
***ec-number
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−
* [[RXN0-3542]]
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−
** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
* [[RXN0-5073]]
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−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[RXN0-5462]]
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−
** in-silico_annotation
+
−
***ec-number
+
−
** experimental_annotation
+
−
***ec-number
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[THYMIDINE-TRIPHOSPHATASE-RXN]]
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−
** in-silico_annotation
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−
***ec-number
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−
** experimental_annotation
+
−
***ec-number
+
−
* [[UPH]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[UTPH]]
+
−
** [[pantograph]]-[[creinhardtii]]
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−
== Pathways associated ==
+
−
* [[PWY-7210]]
+
−
* [[PWY-7198]]
+
−
* [[PWY-7177]]
+
−
* [[PWY-7185]]
+
−
* [[PWY-7184]]
+
−
* [[PWY-6545]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=3684}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: transcription direction=NEGATIVE}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: right end position=6537}}
+
{{#set: common name=3-oxoacyl-synthase}}
−
{{#set: centisome position=55.398495    }}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: reaction associated=ADPA|APYRASE-RXN|ATPASE-RXN|ATPPH|CTPH|DTNH|GDPA|GTPA|GUANOSINE-DIPHOSPHATASE-RXN|NUCLEOSIDE-DIPHOSPHATASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-10862|RXN-12195|RXN-12196|RXN-12197|RXN-12198|RXN-12199|RXN-12200|RXN-14003|RXN-14024|RXN-14187|RXN-14195|RXN-14198|RXN-14199|RXN-14200|RXN-14201|RXN-14205|RXN-14208|RXN-14213|RXN-14214|RXN-14215|RXN-14216|RXN-14217|RXN-14218|RXN-14219|RXN-14220|RXN0-3542|RXN0-5073|RXN0-5462|THYMIDINE-TRIPHOSPHATASE-RXN|UPH|UTPH}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: pathway associated=PWY-7210|PWY-7198|PWY-7177|PWY-7185|PWY-7184|PWY-6545}}
+
{{#set: ec number=EC-2.3.1.41}}
 +
{{#set: gene associated=Tiso_gene_135|Tiso_gene_14485|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_19302|Tiso_gene_15991|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_5939}}
 +
{{#set: in pathway=PWY-5994}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:24, 21 March 2018

Reaction RXN-9650

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9650&oldid=48424"