Difference between revisions of "Tiso gene 11155"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOACYLCOATHIOL-RXN KETOACYLCOATHIOL-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** thiol...")
 
(Created page with "Category:Gene == Gene Tiso_gene_11155 == * right end position: ** 4076 * transcription direction: ** NEGATIVE * left end position: ** 1744 * centisome position: ** 21.8409...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOACYLCOATHIOL-RXN KETOACYLCOATHIOL-RXN] ==
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== Gene Tiso_gene_11155 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 4076
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* common name:
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* transcription direction:
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** thiolase
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** NEGATIVE
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** acetyl-_c-acetyltransferase
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* left end position:
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** 3-ketoacyl-_thiolase
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** 1744
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
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** 21.840952   
 
* Synonym(s):
 
* Synonym(s):
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** Beta-ketothiolase
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[3.6.3.50-RXN]]
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** 1 [[CO-A]][c] '''+''' 1 [[3-KETOACYL-COA]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[Saturated-Fatty-Acyl-CoA]][c]
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** Source: [[orthology-esiliculosus]]
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* With common name(s):
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* Reaction: [[ADENOSINETRIPHOSPHATASE-RXN]]
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** 1 coenzyme A[c] '''+''' 1 a 3-oxoacyl-CoA[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 a 2,3,4-saturated fatty acyl CoA[c]
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[ATPASE-RXN]]
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== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[ATPSYN-RXN]]
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* [[Tiso_gene_3855]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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== Pathways associated ==
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* [[Tiso_gene_17451]]
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* [[PWY-7219]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3856]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15327]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10116]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5136]], fatty acid β-oxidation II (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5136 PWY-5136]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[FAO-PWY]], fatty acid β-oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=FAO-PWY FAO-PWY]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7288]], fatty acid β-oxidation (peroxisome, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7288 PWY-7288]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY66-391]], fatty acid β-oxidation VI (peroxisome): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-391 PWY66-391]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=4076}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21564 21564]
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{{#set: transcription direction=NEGATIVE}}
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* PIR:
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{{#set: left end position=1744}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURTAB XURTAB]
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{{#set: centisome position=21.840952    }}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURTAA XURTAA]
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{{#set: reaction associated=3.6.3.50-RXN|ADENOSINETRIPHOSPHATASE-RXN|ATPASE-RXN|ATPSYN-RXN}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XURT XURT]
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{{#set: pathway associated=PWY-7219}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XUHUAB XUHUAB]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XUEC XUEC]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52165 T52165]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52110 T52110]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07989 T07989]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S72532 S72532]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57792 S57792]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S36838 S36838]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S33637 S33637]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S22784 S22784]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JS0624 JS0624]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64890 H64890]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R00391 R00391]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P77525 P77525]
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** [http://www.uniprot.org/uniprot/P28790 P28790]
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** [http://www.uniprot.org/uniprot/P27796 P27796]
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** [http://www.uniprot.org/uniprot/Q08375 Q08375]
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** [http://www.uniprot.org/uniprot/Q05493 Q05493]
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** [http://www.uniprot.org/uniprot/Q42918 Q42918]
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** [http://www.uniprot.org/uniprot/Q43742 Q43742]
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** [http://www.uniprot.org/uniprot/Q56WD9 Q56WD9]
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** [http://www.uniprot.org/uniprot/Q570C8 Q570C8]
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** [http://www.uniprot.org/uniprot/P21151 P21151]
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** [http://www.uniprot.org/uniprot/P09110 P09110]
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** [http://www.uniprot.org/uniprot/P13437 P13437]
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** [http://www.uniprot.org/uniprot/P21775 P21775]
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** [http://www.uniprot.org/uniprot/P07871 P07871]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=thiolase}}
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{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: ec number=EC-2.3.1.16}}
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{{#set: common name=Beta-ketothiolase}}
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{{#set: gene associated=Tiso_gene_3855|Tiso_gene_17451|Tiso_gene_3856|Tiso_gene_15327|Tiso_gene_10116}}
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{{#set: in pathway=PWY-5136|FAO-PWY|PWY-7288|PWY66-391}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 20:24, 21 March 2018

Gene Tiso_gene_11155

  • right end position:
    • 4076
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 1744
  • centisome position:
    • 21.840952
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_11155&oldid=48435"