Difference between revisions of "Tiso gene 19573"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** s-adenosylmethionin...")
 
(Created page with "Category:Gene == Gene Tiso_gene_19573 == * right end position: ** 2214 * transcription direction: ** POSITIVE * left end position: ** 779 * centisome position: ** 35.15343...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] ==
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== Gene Tiso_gene_19573 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2214
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* common name:
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* transcription direction:
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** s-adenosylmethionine_decarboxylase_proenzyme
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** POSITIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/4.1.1.50 EC-4.1.1.50]
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** 779
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* centisome position:
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** 35.15343   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ALANINE--TRNA-LIGASE-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[S-ADENOSYLMETHIONINAMINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H+[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 S-adenosyl 3-(methylthio)propylamine[c] '''+''' 1 CO2[c]
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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* [[TRNA-CHARGING-PWY]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_4269]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_11030]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[ARGSPECAT-PWY]], spermine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ARGSPECAT-PWY ARGSPECAT-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6834]], spermidine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6834 PWY-6834]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2214}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15981 15981]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=779}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
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{{#set: centisome position=35.15343    }}
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* UNIPROT:
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{{#set: reaction associated=ALANINE--TRNA-LIGASE-RXN}}
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** [http://www.uniprot.org/uniprot/P82184 P82184]
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{{#set: pathway associated=TRNA-CHARGING-PWY}}
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** [http://www.uniprot.org/uniprot/P21182 P21182]
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** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
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** [http://www.uniprot.org/uniprot/P17707 P17707]
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** [http://www.uniprot.org/uniprot/P28918 P28918]
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** [http://www.uniprot.org/uniprot/P17708 P17708]
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** [http://www.uniprot.org/uniprot/P50243 P50243]
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** [http://www.uniprot.org/uniprot/P46255 P46255]
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** [http://www.uniprot.org/uniprot/Q04694 Q04694]
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** [http://www.uniprot.org/uniprot/Q42679 Q42679]
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** [http://www.uniprot.org/uniprot/Q42829 Q42829]
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** [http://www.uniprot.org/uniprot/P79888 P79888]
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** [http://www.uniprot.org/uniprot/O04009 O04009]
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** [http://www.uniprot.org/uniprot/O24575 O24575]
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** [http://www.uniprot.org/uniprot/Q43820 Q43820]
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** [http://www.uniprot.org/uniprot/Q39676 Q39676]
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** [http://www.uniprot.org/uniprot/Q39677 Q39677]
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** [http://www.uniprot.org/uniprot/O49972 O49972]
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** [http://www.uniprot.org/uniprot/O65354 O65354]
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** [http://www.uniprot.org/uniprot/O02655 O02655]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=s-adenosylmethionine_decarboxylase_proenzyme}}
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{{#set: ec number=EC-4.1.1.50}}
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{{#set: gene associated=Tiso_gene_4269|Tiso_gene_11030}}
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{{#set: in pathway=BSUBPOLYAMSYN-PWY|ARGSPECAT-PWY|PWY-6834}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 20:25, 21 March 2018

Gene Tiso_gene_19573

  • right end position:
    • 2214
  • transcription direction:
    • POSITIVE
  • left end position:
    • 779
  • centisome position:
    • 35.15343
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19573&oldid=48575"