Difference between revisions of "GLUTDECARBOX-RXN"

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(Created page with "Category:Gene == Gene Tiso_gene_6815 == * left end position: ** 425 * transcription direction: ** POSITIVE * right end position: ** 4234 * centisome position: ** 3.6004744...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDECARBOX-RXN GLUTDECARBOX-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutamate_dec...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_6815 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTDECARBOX-RXN GLUTDECARBOX-RXN] ==
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* left end position:
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* direction:
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** 425
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** glutamate_decarboxylase_beta
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* right end position:
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* ec number:
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** 4234
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** [http://enzyme.expasy.org/EC/4.1.1.15 EC-4.1.1.15]
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* centisome position:
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** 3.6004744   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ASPAMINOTRANS-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[PROTON]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[4-AMINO-BUTYRATE]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 H+[c] '''+''' 1 L-glutamate[c] '''=>''' 1 CO2[c] '''+''' 1 4-aminobutanoate[c]
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***ec-number
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** [[pantograph]]-[[synechocystis]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[CYSTEINE-AMINOTRANSFERASE-RXN]]
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* Gene: [[Tiso_gene_10395]]
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** experimental_annotation
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** Source: [[orthology-creinhardtii]]
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***automated-name-match
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* Gene: [[Tiso_gene_9927]]
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** [[pantograph]]-[[creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PHEAMINOTRANS-RXN]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** Source: [[orthology-athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** Source: [[orthology-synechocystis]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways ==
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** [[pantograph]]-[[creinhardtii]]
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* [[PWY0-1305]], L-glutamate degradation IX (via 4-aminobutanoate): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1305 PWY0-1305]
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* [[PREPHENATEDEHYDRAT-RXN]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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** [[pantograph]]-[[esiliculosus]]
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* [[GLUDEG-I-PWY]], GABA shunt: [http://metacyc.org/META/NEW-IMAGE?object=GLUDEG-I-PWY GLUDEG-I-PWY]
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* [[RXN-10814]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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** in-silico_annotation
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* [[PWY-4321]], L-glutamate degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4321 PWY-4321]
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***ec-number
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** '''4''' reactions found over '''5''' reactions in the full pathway
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** experimental_annotation
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== Reconstruction information  ==
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***ec-number
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* Category: [[orthology]]
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* [[RXN-11737]]
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** Source: [[orthology-athaliana]]
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** in-silico_annotation
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*** Tool: [[pantograph]]
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***ec-number
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** Source: [[orthology-creinhardtii]]
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** experimental_annotation
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*** Tool: [[pantograph]]
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***ec-number
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** Source: [[orthology-synechocystis]]
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** [[pantograph]]-[[creinhardtii]]
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*** Tool: [[pantograph]]
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* [[RXN-13697]]
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* Category: [[annotation]]
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** in-silico_annotation
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** Source: [[annotation-in-silico_annotation]]
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***ec-number
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*** Tool: [[pathwaytools]]
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** experimental_annotation
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***ec-number
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* [[TYROSINE-AMINOTRANSFERASE-RXN]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways associated ==
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* [[TYRSYN]]
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* [[PWY-7383]]
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* [[ASPARTATESYN-PWY]]
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* [[PWY-7117]]
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* [[PWY-7115]]
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* [[PWY-5329]]
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* [[PWY-5754]]
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* [[PWY-5048]]
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* [[PWY-5913]]
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* [[PWY-6643]]
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* [[PWY-6642]]
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* [[PWY-7432]]
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* [[PWY-7518]]
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* [[PWY-7514]]
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* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
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* [[TYRFUMCAT-PWY]]
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* [[PWY-3581]]
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* [[ASPARTATE-DEG1-PWY]]
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* [[PWY0-1534]]
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* [[PWY-5886]]
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* [[GLUTDEG-PWY]]
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* [[PWY-6318]]
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* [[PWY-5079]]
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* [[ANAPHENOXI-PWY]]
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* [[PWY3O-4108]]
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* [[PHESYN]]
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* [[PWY-6638]]
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* [[ASPARAGINE-DEG1-PWY-1]]
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* [[PWY-5151]]
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== External links  ==
 
== External links  ==
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{{#set: left end position=425}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17785 17785]
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{{#set: right end position=4234}}
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* LIGAND-RXN:
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{{#set: centisome position=3.6004744    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00261 R00261]
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{{#set: reaction associated=ASPAMINOTRANS-RXN|CYSTEINE-AMINOTRANSFERASE-RXN|PHEAMINOTRANS-RXN|PREPHENATEDEHYDRAT-RXN|RXN-10814|RXN-11737|RXN-13697|TYROSINE-AMINOTRANSFERASE-RXN}}
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* UNIPROT:
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{{#set: pathway associated=TYRSYN|PWY-7383|ASPARTATESYN-PWY|PWY-7117|PWY-7115|PWY-5329|PWY-5754|PWY-5048|PWY-5913|PWY-6643|PWY-6642|PWY-7432|PWY-7518|PWY-7514|MALATE-ASPARTATE-SHUTTLE-PWY|TYRFUMCAT-PWY|PWY-3581|ASPARTATE-DEG1-PWY|PWY0-1534|PWY-5886|GLUTDEG-PWY|PWY-6318|PWY-5079|ANAPHENOXI-PWY|PWY3O-4108|PHESYN|PWY-6638|ASPARAGINE-DEG1-PWY-1|PWY-5151}}
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** [http://www.uniprot.org/uniprot/P20228 P20228]
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** [http://www.uniprot.org/uniprot/Q05329 Q05329]
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** [http://www.uniprot.org/uniprot/P18088 P18088]
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** [http://www.uniprot.org/uniprot/P14748 P14748]
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** [http://www.uniprot.org/uniprot/Q07346 Q07346]
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** [http://www.uniprot.org/uniprot/Q99259 Q99259]
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** [http://www.uniprot.org/uniprot/P69910 P69910]
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** [http://www.uniprot.org/uniprot/Q9CG20 Q9CG20]
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** [http://www.uniprot.org/uniprot/P48321 P48321]
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** [http://www.uniprot.org/uniprot/P48319 P48319]
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** [http://www.uniprot.org/uniprot/Q05683 Q05683]
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** [http://www.uniprot.org/uniprot/Q24062 Q24062]
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** [http://www.uniprot.org/uniprot/P69908 P69908]
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** [http://www.uniprot.org/uniprot/P48320 P48320]
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** [http://www.uniprot.org/uniprot/Q59956 Q59956]
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** [http://www.uniprot.org/uniprot/P48318 P48318]
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** [http://www.uniprot.org/uniprot/Q49854 Q49854]
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** [http://www.uniprot.org/uniprot/Q49855 Q49855]
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** [http://www.uniprot.org/uniprot/Q49863 Q49863]
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** [http://www.uniprot.org/uniprot/O81101 O81101]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glutamate_decarboxylase_beta}}
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{{#set: ec number=EC-4.1.1.15}}
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{{#set: gene associated=Tiso_gene_10395|Tiso_gene_9927}}
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{{#set: in pathway=PWY0-1305|GLUDEG-I-PWY|PWY-4321}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:25, 21 March 2018

Reaction GLUTDECARBOX-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • glutamate_decarboxylase_beta
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1305, L-glutamate degradation IX (via 4-aminobutanoate): PWY0-1305
    • 1 reactions found over 1 reactions in the full pathway
  • GLUDEG-I-PWY, GABA shunt: GLUDEG-I-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-4321, L-glutamate degradation IV: PWY-4321
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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