Difference between revisions of "2.4.1.83-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** protoporp...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.83-RXN 2.4.1.83-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** dolichol_phosphate_ma...")
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTOPORGENOXI-RXN PROTOPORGENOXI-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.83-RXN 2.4.1.83-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** protoporphyrinogen_ix_oxidase_usually_abbreviated
+
** dolichol_phosphate_mannose
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.3.4 EC-1.3.3.4]
+
** [http://enzyme.expasy.org/EC/2.4.1.83 EC-2.4.1.83]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRIN_IX]][c] '''+''' 3 [[HYDROGEN-PEROXIDE]][c]
+
** 1 [[GDP-MANNOSE]][c] '''+''' 1 [[DOLICHOLP]][c] '''=>''' 1 [[GDP]][c] '''+''' 1 [[CPD-171]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 protoporphyrinogen IX[c] '''+''' 3 oxygen[c] '''=>''' 1 protoporphyrin IX[c] '''+''' 3 hydrogen peroxide[c]
+
** 1 GDP-α-D-mannose[c] '''+''' 1 a dolichyl phosphate[c] '''=>''' 1 GDP[c] '''+''' 1 a dolichyl β-D-mannosyl phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11986]]
+
* Gene: [[Tiso_gene_16772]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_15401]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
+
* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation (eukaryotic, high mannose): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''19''' reactions found over '''19''' reactions in the full pathway
−
* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
+
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
+
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
−
*** [[athaliana]]
+
* Category: [[annotation]]
−
*** [[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[manual]]:
+
*** Tool: [[pathwaytools]]
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25576 25576]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21184 21184]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03222 R03222]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01009 R01009]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P50336 P50336]
+
** [http://www.uniprot.org/uniprot/P14020 P14020]
−
** [http://www.uniprot.org/uniprot/Q49404 Q49404]
+
** [http://www.uniprot.org/uniprot/Q26732 Q26732]
−
** [http://www.uniprot.org/uniprot/Q9CHX0 Q9CHX0]
+
** [http://www.uniprot.org/uniprot/P54856 P54856]
−
** [http://www.uniprot.org/uniprot/P0ACB4 P0ACB4]
+
** [http://www.uniprot.org/uniprot/Q9TYJ7 Q9TYJ7]
−
** [http://www.uniprot.org/uniprot/Q7M1R6 Q7M1R6]
+
** [http://www.uniprot.org/uniprot/O14466 O14466]
−
** [http://www.uniprot.org/uniprot/P51175 P51175]
+
−
** [http://www.uniprot.org/uniprot/O24163 O24163]
+
−
** [http://www.uniprot.org/uniprot/O24164 O24164]
+
−
** [http://www.uniprot.org/uniprot/O64384 O64384]
+
−
** [http://www.uniprot.org/uniprot/O64385 O64385]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=protoporphyrinogen_ix_oxidase_usually_abbreviated}}
+
{{#set: common name=dolichol_phosphate_mannose}}
−
{{#set: ec number=EC-1.3.3.4}}
+
{{#set: ec number=EC-2.4.1.83}}
−
{{#set: gene associated=Tiso_gene_11986|Tiso_gene_15401}}
+
{{#set: gene associated=Tiso_gene_16772}}
−
{{#set: in pathway=PWY0-1415|HEME-BIOSYNTHESIS-II|CHLOROPHYLL-SYN|PWY-7159}}
+
{{#set: in pathway=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Latest revision as of 20:25, 21 March 2018

Reaction 2.4.1.83-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • dolichol_phosphate_mannose
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 GDP-α-D-mannose[c] + 1 a dolichyl phosphate[c] => 1 GDP[c] + 1 a dolichyl β-D-mannosyl phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=2.4.1.83-RXN&oldid=48679"