Difference between revisions of "SHIKIMATE-5-DEHYDROGENASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-471 RXN1G-471] == * direction: ** LEFT-TO-RIGHT * common name: ** trans-delta2-cis,cis-delta1...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-471 RXN1G-471] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SHIKIMATE-5-DEHYDROGENASE-RXN SHIKIMATE-5-DEHYDROGENASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** trans-delta2-cis,cis-delta19,37-C56:3-[acyl-carrier protein] reductase
+
** pentafunctional_protein
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.M4 EC-1.3.1.M4]
+
** [http://enzyme.expasy.org/EC/1.1.1.25 EC-1.1.1.25]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[trans-D2-cis-cis-D19-37-C56-3-ACPs]][c] '''+''' 1 [[NADH]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[cis-cis-D19-37-C56-2-ACPs]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[SHIKIMATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 a trans-delta2-cis,cis-delta19,37-C56:3-[acp][c] '''+''' 1 NADH[c] '''=>''' 1 NAD+[c] '''+''' 1 a cis,cis-delta19-37-C56:2-[acp][c]
+
** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 3-dehydroshikimate[c] '''=>''' 1 NADP+[c] '''+''' 1 shikimate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10778]]
+
* Gene: [[Tiso_gene_5752]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5753]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
−
** '''86''' reactions found over '''182''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17737 17737]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02413 R02413]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P07547 P07547]
 +
** [http://www.uniprot.org/uniprot/P08566 P08566]
 +
** [http://www.uniprot.org/uniprot/Q58484 Q58484]
 +
** [http://www.uniprot.org/uniprot/Q9PIA0 Q9PIA0]
 +
** [http://www.uniprot.org/uniprot/P0A6D5 P0A6D5]
 +
** [http://www.uniprot.org/uniprot/Q9CES7 Q9CES7]
 +
** [http://www.uniprot.org/uniprot/Q44606 Q44606]
 +
** [http://www.uniprot.org/uniprot/Q44608 Q44608]
 +
** [http://www.uniprot.org/uniprot/Q44609 Q44609]
 +
** [http://www.uniprot.org/uniprot/Q44610 Q44610]
 +
** [http://www.uniprot.org/uniprot/Q44611 Q44611]
 +
** [http://www.uniprot.org/uniprot/Q44612 Q44612]
 +
** [http://www.uniprot.org/uniprot/P15770 P15770]
 +
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
 +
** [http://www.uniprot.org/uniprot/O65917 O65917]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trans-delta2-cis,cis-delta19,37-C56:3-[acyl-carrier protein] reductase}}
+
{{#set: common name=pentafunctional_protein}}
−
{{#set: ec number=EC-1.3.1.M4}}
+
{{#set: ec number=EC-1.1.1.25}}
−
{{#set: gene associated=Tiso_gene_10778}}
+
{{#set: gene associated=Tiso_gene_5752|Tiso_gene_5753}}
−
{{#set: in pathway=PWYG-321}}
+
{{#set: in pathway=PWY-6163}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 20:26, 21 March 2018

Reaction SHIKIMATE-5-DEHYDROGENASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • pentafunctional_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6163, chorismate biosynthesis from 3-dehydroquinate: PWY-6163
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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