Difference between revisions of "TRNA-Dihydrouridines"

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== TISOGEM description ==
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[[Category:Metabolite]]
== Automatic reconstruction with [http://aureme.genouest.org AuReMe] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=tRNA-Dihydrouridines tRNA-Dihydrouridines] ==
The automatic reconstruction of ''Tisocrysis_lutea'' results to a Genome scale Model containing 2800 reactions, 2746 metabolites, 2728 genes and 1213 pathways. This GeM was obtained based on the following sources:
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* common name:
* Based on annotation data:
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** a 5,6-dihydrouridine in tRNA
** Tool: [http://bioinformatics.ai.sri.com/ptools/ Pathway tools]
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* Synonym(s):
*** Creation of a metabolic network containing 2568 reactions
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** a tRNA containing 5,6-dihydrouridine
* Based on orthology data:
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** Tool: [http://pathtastic.gforge.inria.fr Pantograph]
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*** From template ''CREINHARDTII'' creation of a metabolic network containing: 558 reactions
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*** From template ''SYNECHOCYSTIS'' creation of a metabolic network containing: 260 reactions
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*** From template ''ATHALIANA'' creation of a metabolic network containing: 419 reactions
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*** From template ''ESILICULOSUS'' creation of a metabolic network containing: 1191 reactions
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* Based on expertise:
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*** 314 reaction(s) added
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* Based on gap-filling:
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** Tool: [https://pypi.python.org/pypi/meneco meneco]
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*** 21 reaction(s) added
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[[FILE:venn.png|frameless|border]]
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== Reaction(s) known to consume the compound ==
 
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== Reaction(s) known to produce the compound ==
== Collaborative curation ==  
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* [[RXN0-1281]]
* Suggest reactions to add or remove:
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== Reaction(s) of unknown directionality ==
** Download this [[MEDIA:Add_delete_reaction.csv|from]]
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== External links  ==
* Suggest new reactions to create and add:
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{{#set: common name=a 5,6-dihydrouridine in tRNA}}
** Download this [[MEDIA:Reaction_creator.csv|form]]
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{{#set: common name=a tRNA containing 5,6-dihydrouridine}}
* '''Follow the examples given in the form to correctly share your suggestions'''
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{{#set: produced by=RXN0-1281}}
* Send the completed form(s) to: CONTACT_MAIL
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Latest revision as of 19:04, 21 March 2018

Metabolite tRNA-Dihydrouridines

  • common name:
    • a 5,6-dihydrouridine in tRNA
  • Synonym(s):
    • a tRNA containing 5,6-dihydrouridine

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links