Difference between revisions of "RXN-12575"

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(Created page with "Category:Gene == Gene Tiso_gene_1983 == * left end position: ** 4053 * transcription direction: ** POSITIVE * right end position: ** 19425 * centisome position: ** 19.3867...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] == * direction: ** LEFT-TO-RIGHT * common name: ** all-trans retinyl-ester hyd...")
 
(2 intermediate revisions by the same user not shown)
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_1983 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] ==
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* left end position:
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* direction:
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** 4053
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** all-trans retinyl-ester hydrolase
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* right end position:
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** ORF
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** 19425
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** serine_esterase
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* centisome position:
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** alpha_beta_hydrolase
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** 19.386778   
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** sialate_o-acetylesterase-like_protein
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** lysophospholipase
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** protein_chloroplastic
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** alpha_beta_hydrolase_fold_protein
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** para-nitrobenzyl_esterase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[ATPASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[All-trans-Retinyl-Esters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c] '''+''' 1 [[CPD-13524]][c]
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***ec-number
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* With common name(s):
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== Pathways associated ==
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** 1 an all-trans-retinyl ester[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 a long-chain fatty acid[c] '''+''' 1 all-trans-retinol[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_11351]]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_1537]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_4606]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_17029]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_1538]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_9429]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_19778]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_4650]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_12686]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_10066]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_16518]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_1922]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_2556]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways ==
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* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=4053}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=all-trans retinyl-ester hydrolase}}
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{{#set: right end position=19425}}
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{{#set: common name=ORF}}
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{{#set: centisome position=19.386778    }}
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{{#set: common name=serine_esterase}}
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{{#set: reaction associated=ATPASE-RXN}}
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{{#set: common name=alpha_beta_hydrolase}}
 +
{{#set: common name=sialate_o-acetylesterase-like_protein}}
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{{#set: common name=lysophospholipase}}
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{{#set: common name=protein_chloroplastic}}
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{{#set: common name=alpha_beta_hydrolase_fold_protein}}
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{{#set: common name=para-nitrobenzyl_esterase}}
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{{#set: ec number=EC-3.1.1.1}}
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{{#set: gene associated=Tiso_gene_11351|Tiso_gene_1537|Tiso_gene_4606|Tiso_gene_17029|Tiso_gene_1538|Tiso_gene_9429|Tiso_gene_19778|Tiso_gene_4650|Tiso_gene_12686|Tiso_gene_10066|Tiso_gene_16518|Tiso_gene_1922|Tiso_gene_2556}}
 +
{{#set: in pathway=PWY-6857}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:05, 21 March 2018

Reaction RXN-12575

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • all-trans retinyl-ester hydrolase
    • ORF
    • serine_esterase
    • alpha_beta_hydrolase
    • sialate_o-acetylesterase-like_protein
    • lysophospholipase
    • protein_chloroplastic
    • alpha_beta_hydrolase_fold_protein
    • para-nitrobenzyl_esterase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6857, retinol biosynthesis: PWY-6857
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12575&oldid=39397"