Difference between revisions of "F16BDEPHOS-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ACRYLATE ACRYLATE] == * smiles: ** C=CC([O-])=O * inchi key: ** InChIKey=NIXOWILDQLNWCW-UHFFFAO...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16BDEPHOS-RXN F16BDEPHOS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** fructose-_-bispho...")
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ACRYLATE ACRYLATE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=F16BDEPHOS-RXN F16BDEPHOS-RXN] ==
−
* smiles:
+
* direction:
−
** C=CC([O-])=O
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=NIXOWILDQLNWCW-UHFFFAOYSA-M
+
 
* common name:
 
* common name:
−
** acrylate
+
** fructose-_-bisphosphatase
−
* molecular weight:
+
** chloroplast_fructose-_-bisphosphatase
−
** 71.055   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.3.11 EC-3.1.3.11]
 
* Synonym(s):
 
* Synonym(s):
−
** acrylic acid
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[R311-RXN]]
+
** 1 [[FRUCTOSE-16-DIPHOSPHATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[Pi]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 fructose 1,6-bisphosphate[c] '''+''' 1 H2O[c] '''=>''' 1 β-D-fructofuranose 6-phosphate[c] '''+''' 1 phosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_15398]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_9435]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_16502]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4905]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_8226]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_4904]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3483]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''11''' reactions found over '''11''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* UM-BBD-CPD : c0113
+
* RHEA:
−
* PUBCHEM:
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11064 11064]
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=25188 25188]
+
* LIGAND-RXN:
−
* HMDB : HMDB31647
+
** [http://www.genome.jp/dbget-bin/www_bget?R00762 R00762]
−
* LIGAND-CPD:
+
* UNIPROT:
−
** [http://www.genome.jp/dbget-bin/www_bget?C00511 C00511]
+
** [http://www.uniprot.org/uniprot/P09199 P09199]
−
* CHEMSPIDER:
+
** [http://www.uniprot.org/uniprot/P19112 P19112]
−
** [http://www.chemspider.com/Chemical-Structure.23524.html 23524]
+
** [http://www.uniprot.org/uniprot/P22780 P22780]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/P09467 P09467]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=37080 37080]
+
** [http://www.uniprot.org/uniprot/Q9JUL6 Q9JUL6]
−
* METABOLIGHTS : MTBLC37080
+
** [http://www.uniprot.org/uniprot/Q9CIU9 Q9CIU9]
−
{{#set: smiles=C=CC([O-])=O}}
+
** [http://www.uniprot.org/uniprot/P09202 P09202]
−
{{#set: inchi key=InChIKey=NIXOWILDQLNWCW-UHFFFAOYSA-M}}
+
** [http://www.uniprot.org/uniprot/Q45597 Q45597]
−
{{#set: common name=acrylate}}
+
** [http://www.uniprot.org/uniprot/P45292 P45292]
−
{{#set: molecular weight=71.055    }}
+
** [http://www.uniprot.org/uniprot/Q9PP83 Q9PP83]
−
{{#set: common name=acrylic acid}}
+
** [http://www.uniprot.org/uniprot/P19912 P19912]
−
{{#set: produced by=R311-RXN}}
+
** [http://www.uniprot.org/uniprot/P19911 P19911]
 +
** [http://www.uniprot.org/uniprot/Q9HGZ4 Q9HGZ4]
 +
** [http://www.uniprot.org/uniprot/P09201 P09201]
 +
** [http://www.uniprot.org/uniprot/P0A993 P0A993]
 +
** [http://www.uniprot.org/uniprot/P00636 P00636]
 +
** [http://www.uniprot.org/uniprot/P23014 P23014]
 +
** [http://www.uniprot.org/uniprot/P27994 P27994]
 +
** [http://www.uniprot.org/uniprot/P14766 P14766]
 +
** [http://www.uniprot.org/uniprot/P09195 P09195]
 +
** [http://www.uniprot.org/uniprot/Q7M0S7 Q7M0S7]
 +
** [http://www.uniprot.org/uniprot/P25851 P25851]
 +
** [http://www.uniprot.org/uniprot/Q05079 Q05079]
 +
** [http://www.uniprot.org/uniprot/P46275 P46275]
 +
** [http://www.uniprot.org/uniprot/P46276 P46276]
 +
** [http://www.uniprot.org/uniprot/Q43139 Q43139]
 +
** [http://www.uniprot.org/uniprot/P00637 P00637]
 +
** [http://www.uniprot.org/uniprot/O65827 O65827]
 +
** [http://www.uniprot.org/uniprot/Q42796 Q42796]
 +
** [http://www.uniprot.org/uniprot/P46267 P46267]
 +
** [http://www.uniprot.org/uniprot/Q07204 Q07204]
 +
** [http://www.uniprot.org/uniprot/P22418 P22418]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=fructose-_-bisphosphatase}}
 +
{{#set: common name=chloroplast_fructose-_-bisphosphatase}}
 +
{{#set: ec number=EC-3.1.3.11}}
 +
{{#set: gene associated=Tiso_gene_15398|Tiso_gene_9435|Tiso_gene_16502|Tiso_gene_4905|Tiso_gene_8226|Tiso_gene_4904|Tiso_gene_3483}}
 +
{{#set: in pathway=GLUCONEO-PWY|SUCSYN-PWY|GLYCOLYSIS|CALVIN-PWY|PWY-5484|P185-PWY|PWY66-399}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Latest revision as of 19:13, 21 March 2018

Reaction F16BDEPHOS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • fructose-_-bisphosphatase
    • chloroplast_fructose-_-bisphosphatase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 fructose 1,6-bisphosphate[c] + 1 H2O[c] => 1 β-D-fructofuranose 6-phosphate[c] + 1 phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis): SUCSYN-PWY
    • 7 reactions found over 9 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 11 reactions found over 11 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • PWY66-399, gluconeogenesis III: PWY66-399
    • 10 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=F16BDEPHOS-RXN&oldid=40228"