Difference between revisions of "GLYSYN-ALA-PWY"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] == * direction: ** LEFT-TO-RIGHT * common name: ** 9-cis-epoxycarotenoid_dioxy...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-ALA-PWY GLYSYN-ALA-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX...")
 
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13374 RXN-13374] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLYSYN-ALA-PWY GLYSYN-ALA-PWY] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
** 9-cis-epoxycarotenoid_dioxygenase
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** glycine biosynthesis III
** 9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein
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** beta-carotene
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* ec number:
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** [http://enzyme.expasy.org/EC/1.13.11.63 EC-1.13.11.63]
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* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''1''' reactions found over '''1''' reactions in the full pathway
** 1 [[CPD1F-129]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 2 [[RETINAL]][c]
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* [[ALANINE--GLYOXYLATE-AMINOTRANSFERASE-RXN]]
* With common name(s):
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** 3 associated gene(s):
** 1 all-trans-β-carotene[c] '''+''' 1 oxygen[c] '''=>''' 2 all-trans-retinal[c]
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*** [[Tiso_gene_6134]]
 
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*** [[Tiso_gene_5726]]
== Genes associated with this reaction  ==
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*** [[Tiso_gene_11231]]
Genes have been associated with this reaction based on different elements listed below.
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** 5 reconstruction source(s) associated:
* [[Tiso_gene_7740]]
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*** [[annotation-experimental_annotation]]
** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
* [[Tiso_gene_13079]]
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*** [[manual-primary_network]]
** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
***EC-NUMBER
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== Reaction(s) not found ==
* [[Tiso_gene_4653]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13078]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
* RHEA:
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{{#set: taxonomic range=TAX-2}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=32888 32888]
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{{#set: taxonomic range=TAX-2157}}
* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2759}}
** [http://www.genome.jp/dbget-bin/www_bget?R00032 R00032]
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{{#set: common name=glycine biosynthesis III}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=1}}
{{#set: common name=9-cis-epoxycarotenoid_dioxygenase}}
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{{#set: total reaction=1}}
{{#set: common name=9-cis-epoxycarotenoid_neoxanthin_cleavage_enzyme-like_protein}}
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{{#set: completion rate=100.0}}
{{#set: common name=beta-carotene}}
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{{#set: ec number=EC-1.13.11.63}}
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{{#set: gene associated=Tiso_gene_7740|Tiso_gene_13079|Tiso_gene_4653|Tiso_gene_13078}}
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{{#set: in pathway=PWY-6857}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Latest revision as of 19:07, 21 March 2018

Pathway GLYSYN-ALA-PWY

Reaction(s) found

1 reactions found over 1 reactions in the full pathway

Reaction(s) not found

External links