Difference between revisions of "Tiso gene 5675"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9651 RXN-9651] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
(Created page with "Category:Gene == Gene Tiso_gene_5675 == * right end position: ** 11005 * transcription direction: ** POSITIVE * left end position: ** 8899 * centisome position: ** 68.0455...")
 
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9651 RXN-9651] ==
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== Gene Tiso_gene_5675 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 11005
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* common name:
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* transcription direction:
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** polyketide_synthase
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** POSITIVE
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** 3-oxoacyl-synthase
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* left end position:
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* ec number:
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** 8899
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** 68.04558   
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** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[FAA]]
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** 1 [[PROTON]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[3-oxo-decanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[FUMARYLACETOACETASE-RXN]]
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** 1 H+[c] '''+''' 1 an octanoyl-[acp][c] '''+''' 1 malonyl-CoA[c] '''=>''' 1 coenzyme A[c] '''+''' 1 a 3-oxo-decanoyl-[acp][c] '''+''' 1 CO2[c]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_136]]
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* [[TYRFUMCAT-PWY]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15991]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5939]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14485]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19302]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=11005}}
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{{#set: common name=polyketide_synthase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=3-oxoacyl-synthase}}
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{{#set: left end position=8899}}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: centisome position=68.04558    }}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: reaction associated=FAA|FUMARYLACETOACETASE-RXN}}
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{{#set: ec number=EC-2.3.1.41}}
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{{#set: pathway associated=TYRFUMCAT-PWY}}
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{{#set: gene associated=Tiso_gene_136|Tiso_gene_15991|Tiso_gene_10876|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_5939|Tiso_gene_14485|Tiso_gene_19302|Tiso_gene_135}}
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{{#set: in pathway=PWY-5994}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Latest revision as of 19:08, 21 March 2018

Gene Tiso_gene_5675

  • right end position:
    • 11005
  • transcription direction:
    • POSITIVE
  • left end position:
    • 8899
  • centisome position:
    • 68.04558
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_5675&oldid=39766"