Difference between revisions of "SHIKIMATE-5P"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12400 RXN-12400] == * direction: ** LEFT-TO-RIGHT * common name: ** xyloglucan XLLG oligosaccha...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.68-RXN 2.7.1.68-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-phosphatidylinosito...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12400 RXN-12400] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.68-RXN 2.7.1.68-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** xyloglucan XLLG oligosaccharide β-galactosidase
+
** 1-phosphatidylinositol-4-phosphate_5-kinase
−
** glycoside_hydrolase
+
** ORF
−
** polyprotein
+
** phosphatidylinositol-4-phosphate_5-kinase
 +
** phosphatidylinositol4phosphate5kinase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.23 EC-3.2.1.23]
+
** [http://enzyme.expasy.org/EC/2.7.1.68 EC-2.7.1.68]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-13378]][c] '''+''' 2 [[WATER]][c] '''=>''' 2 [[D-galactopyranose]][c] '''+''' 1 [[CPD-13375]][c]
+
** 1 [[CPD-1108]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PHOSPHATIDYL-MYO-INOSITOL-45-BISPHOSPHA]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 XLLG xyloglucan oligosaccharide[c] '''+''' 2 H2O[c] '''=>''' 2 D-galactopyranose[c] '''+''' 1 XXXG xyloglucan oligosaccharide[c]
+
** 1 a 1-phosphatidyl-1D-myo-inositol 4-phosphate[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 a 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12839]]
+
* [[Tiso_gene_2021]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_17532]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_1131]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_1398]]
+
* [[Tiso_gene_15721]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_14966]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_2350]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_11381]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
* [[Tiso_gene_15722]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_14055]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_17887]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_9590]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_2008]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_730]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_17558]]
+
* [[Tiso_gene_9249]]
 +
** [[pantograph]]-[[athaliana]]
 +
* [[Tiso_gene_18887]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_7487]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6807]], xyloglucan degradation II (exoglucanase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6807 PWY-6807]
+
* [[PWY-6352]], 3-phosphoinositide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6352 PWY-6352]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6351]], D-myo-inositol (1,4,5)-trisphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6351 PWY-6351]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14425 14425]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03469 R03469]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P48426 P48426]
 +
** [http://www.uniprot.org/uniprot/Q56YP2 Q56YP2]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=xyloglucan XLLG oligosaccharide β-galactosidase}}
+
{{#set: common name=1-phosphatidylinositol-4-phosphate_5-kinase}}
−
{{#set: common name=glycoside_hydrolase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=polyprotein}}
+
{{#set: common name=phosphatidylinositol-4-phosphate_5-kinase}}
−
{{#set: ec number=EC-3.2.1.23}}
+
{{#set: common name=phosphatidylinositol4phosphate5kinase}}
−
{{#set: gene associated=Tiso_gene_12839|Tiso_gene_1398|Tiso_gene_17558}}
+
{{#set: ec number=EC-2.7.1.68}}
−
{{#set: in pathway=PWY-6807}}
+
{{#set: gene associated=Tiso_gene_2021|Tiso_gene_17532|Tiso_gene_1131|Tiso_gene_15721|Tiso_gene_14966|Tiso_gene_2350|Tiso_gene_11381|Tiso_gene_15722|Tiso_gene_14055|Tiso_gene_17887|Tiso_gene_9590|Tiso_gene_2008|Tiso_gene_730|Tiso_gene_9249|Tiso_gene_18887|Tiso_gene_7487}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-6352|PWY-6351}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Revision as of 17:58, 18 March 2018

Reaction 2.7.1.68-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1-phosphatidylinositol-4-phosphate_5-kinase
    • ORF
    • phosphatidylinositol-4-phosphate_5-kinase
    • phosphatidylinositol4phosphate5kinase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6352, 3-phosphoinositide biosynthesis: PWY-6352
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-6351, D-myo-inositol (1,4,5)-trisphosphate biosynthesis: PWY-6351
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SHIKIMATE-5P&oldid=20936"