Difference between revisions of "Tiso gene 1584"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5285 RXN-5285] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** protochlorophyllide_re...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12726 RXN-12726] == * direction: ** LEFT-TO-RIGHT * common name: ** cog0031:_cysteine_synthase...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5285 RXN-5285] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12726 RXN-12726] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** cog0031:_cysteine_synthase
−
** protochlorophyllide_reductase
+
** cysteine_synthase
 +
** cysteine
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.33 EC-1.3.1.33]
+
** [http://enzyme.expasy.org/EC/2.5.1.47 EC-2.5.1.47]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[DIVINYL-PROTOCHLOROPHYLLIDE-A]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[DIVINYLCHLOROPHYLLIDE-A]][c]
+
** 1 [[CPD-678]][c] '''+''' 1 [[ACETYLSERINE]][c] '''=>''' 1 [[L-SELENOCYSTEINE]][c] '''+''' 1 [[ACET]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 3,8-divinyl protochlorophyllide a[c] '''=>''' 1 NADP+[c] '''+''' 1 3,8-divinyl chlorophyllide a[c]
+
** 1 hydrogen selenide[c] '''+''' 1 O-acetyl-L-serine[c] '''=>''' 1 L-selenocysteine[c] '''+''' 1 acetate[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10077]]
+
* [[Tiso_gene_6110]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_19518]]
+
** [[pantograph]]-[[creinhardtii]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[creinhardtii]]
−
***AUTOMATED-NAME-MATCH
+
** [[pantograph]]-[[creinhardtii]]
−
* [[Tiso_gene_17141]]
+
* [[Tiso_gene_12184]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 +
* [[Tiso_gene_7852]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_819]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_17043]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2283]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
+
* [[PWY-6936]], seleno-amino acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6936 PWY-6936]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
** Source: [[orthology-creinhardtii]]
−
** [[primary_network]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[experimental_annotation]]
+
* Category: [[annotation]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R06286 R06286]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: common name=cog0031:_cysteine_synthase}}
−
{{#set: common name=protochlorophyllide_reductase}}
+
{{#set: common name=cysteine_synthase}}
−
{{#set: ec number=EC-1.3.1.33}}
+
{{#set: common name=cysteine}}
−
{{#set: gene associated=Tiso_gene_10077|Tiso_gene_19518|Tiso_gene_17141}}
+
{{#set: ec number=EC-2.5.1.47}}
−
{{#set: in pathway=CHLOROPHYLL-SYN}}
+
{{#set: gene associated=Tiso_gene_6110|Tiso_gene_12184|Tiso_gene_7852|Tiso_gene_819|Tiso_gene_17043|Tiso_gene_2283}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY-6936}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
−
{{#set: reconstruction category=manual}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 17:58, 18 March 2018

Reaction RXN-12726

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • cog0031:_cysteine_synthase
    • cysteine_synthase
    • cysteine
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6936, seleno-amino acid biosynthesis: PWY-6936
    • 4 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1584&oldid=21040"