Difference between revisions of "Tiso gene 19083"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14025 RXN-14025] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_pr...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.20-RXN 1.5.1.20-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** methylenetetrahydrofo...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14025 RXN-14025] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.20-RXN 1.5.1.20-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 5_deoxy_cytosolic_type_c_protein
+
** methylenetetrahydrofolate_reductase
−
** 5_-nucleotidase
+
** -methylenetetrahydrofolate_reductase
−
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
+
** [http://enzyme.expasy.org/EC/1.5.1.20 EC-1.5.1.20]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[UMP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[URIDINE]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[METHYLENE-THF-GLU-N]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[5-METHYL-THF-GLU-N]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 UMP[c] '''=>''' 1 phosphate[c] '''+''' 1 uridine[c]
+
** 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 a 5,10-methylene-tetrahydrofolate[c] '''=>''' 1 NAD+[c] '''+''' 1 an N5-methyl-tetrahydrofolate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14435]]
+
* [[Tiso_gene_14582]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_14434]]
+
** EXPERIMENTAL_ANNOTATION
−
** IN-SILICO_ANNOTATION
+
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_5911]]
 
−
** IN-SILICO_ANNOTATION
 
−
***AUTOMATED-NAME-MATCH
 
−
* [[Tiso_gene_14246]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_6640]]
 
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_13929]]
+
* [[Tiso_gene_16954]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_6988]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7185]], UTP and CTP dephosphorylation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7185 PWY-7185]
+
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''7''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-7821]], tunicamycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7821 PWY-7821]
+
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[manual]]
−
** [[pathwaytools]]:
+
** Source: [[manual-primary_network]]
−
*** [[in-silico_annotation]]
+
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* LIGAND-RXN:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29360 29360]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07168 R07168]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9PN93 Q9PN93]
 +
** [http://www.uniprot.org/uniprot/Q9JUT7 Q9JUT7]
 +
** [http://www.uniprot.org/uniprot/P45208 P45208]
 +
** [http://www.uniprot.org/uniprot/P0AEZ1 P0AEZ1]
 +
** [http://www.uniprot.org/uniprot/P11003 P11003]
 +
** [http://www.uniprot.org/uniprot/P46151 P46151]
 +
** [http://www.uniprot.org/uniprot/P53128 P53128]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
+
{{#set: common name=methylenetetrahydrofolate_reductase}}
−
{{#set: common name=5_-nucleotidase}}
+
{{#set: common name=-methylenetetrahydrofolate_reductase}}
−
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
+
{{#set: ec number=EC-1.5.1.20}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_14582|Tiso_gene_16954}}
−
{{#set: ec number=EC-3.1.3.5}}
+
{{#set: in pathway=PWY-2201|1CMET2-PWY|PWY-3841|CODH-PWY}}
−
{{#set: gene associated=Tiso_gene_14435|Tiso_gene_14434|Tiso_gene_5911|Tiso_gene_14246|Tiso_gene_6640|Tiso_gene_13929|Tiso_gene_6988}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: in pathway=PWY-7185|PWY-7821}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Revision as of 17:59, 18 March 2018

Reaction 1.5.1.20-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • methylenetetrahydrofolate_reductase
    • -methylenetetrahydrofolate_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-2201, folate transformations I: PWY-2201
    • 7 reactions found over 12 reactions in the full pathway
  • 1CMET2-PWY, N10-formyl-tetrahydrofolate biosynthesis: 1CMET2-PWY
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-3841, folate transformations II: PWY-3841
    • 9 reactions found over 11 reactions in the full pathway
  • CODH-PWY, reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): CODH-PWY
    • 5 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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