Difference between revisions of "Tiso gene 19780"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17116 RXN-17116] == * direction: ** LEFT-TO-RIGHT * common name: ** thiolase ** acetyl-_c-acety...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-5...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17116 RXN-17116] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-58024 TAX-58024]
 
* common name:
 
* common name:
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** thiolase
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** flavonoid biosynthesis
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** acetyl-_c-acetyltransferase
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** 3-ketoacyl-_thiolase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.16 EC-2.3.1.16]
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* Synonym(s):
 
* Synonym(s):
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** flavonoid biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''4''' reactions found over '''5''' reactions in the full pathway
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** 1 [[CPD-18494]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[CPD-17365]][c] '''+''' 1 [[ACETYL-COA]][c]
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* [[4-COUMARATE--COA-LIGASE-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 3-oxo-(6Z,9Z,12Z,15Z,18Z)-tetracosapentaenoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 (4Z,7Z,10Z,13Z,16Z)-docosapentaenoyl-CoA[c] '''+''' 1 acetyl-CoA[c]
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*** [[Tiso_gene_12275]]
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*** [[Tiso_gene_14183]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* [[Tiso_gene_3856]]
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*** [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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* [[APIGNAR-RXN]]
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***EC-NUMBER
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** 2 associated gene(s):
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* [[Tiso_gene_10116]]
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*** [[Tiso_gene_9838]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_13414]]
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***EC-NUMBER
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** 2 reconstruction source(s) associated:
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_15327]]
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* [[NARINGENIN-3-DIOXYGENASE-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** 1 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_3330]]
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* [[Tiso_gene_3855]]
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** 2 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** EXPERIMENTAL_ANNOTATION
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* [[RXN-3142]]
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***EC-NUMBER
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** 1 associated gene(s):
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* [[Tiso_gene_17451]]
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*** [[Tiso_gene_2613]]
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** IN-SILICO_ANNOTATION
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** 1 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[orthology-athaliana]]
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** EXPERIMENTAL_ANNOTATION
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== Reaction(s) not found ==
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=NARINGENIN-CHALCONE-SYNTHASE-RXN NARINGENIN-CHALCONE-SYNTHASE-RXN]
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== Pathways  ==
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* [[PWY-7726]], (4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoate biosynthesis (6-desaturase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7726 PWY-7726]
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** '''5''' reactions found over '''13''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* ARACYC:
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{{#set: common name=thiolase}}
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** [http://metacyc.org/ARA/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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{{#set: common name=acetyl-_c-acetyltransferase}}
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{{#set: taxonomic range=TAX-58024}}
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{{#set: common name=3-ketoacyl-_thiolase}}
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{{#set: common name=flavonoid biosynthesis}}
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{{#set: ec number=EC-2.3.1.16}}
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{{#set: common name=flavonoid biosynthesis}}
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{{#set: gene associated=Tiso_gene_3856|Tiso_gene_10116|Tiso_gene_15327|Tiso_gene_3855|Tiso_gene_17451}}
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{{#set: reaction found=4}}
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{{#set: in pathway=PWY-7726}}
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{{#set: total reaction=5}}
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{{#set: reconstruction category=annotation}}
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{{#set: completion rate=80.0}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 19:02, 18 March 2018

Pathway PWY1F-FLAVSYN

  • taxonomic range:
  • common name:
    • flavonoid biosynthesis
  • Synonym(s):
    • flavonoid biosynthesis

Reaction(s) found

4 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19780&oldid=21397"