Difference between revisions of "RXN-12959"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1404 RXN-1404] == * direction: ** LEFT-TO-RIGHT * common name: ** nitrilase * ec number: ** [ht...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7533 PWY-7533] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1131492 TAX...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1404 RXN-1404] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7533 PWY-7533] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1131492 TAX-1131492]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
 
* common name:
 
* common name:
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** nitrilase
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** gliotoxin biosynthesis
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* ec number:
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** [http://enzyme.expasy.org/EC/3.5.5.1 EC-3.5.5.1]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''9''' reactions in the full pathway
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** 1 [[INDOLEYL-CPD]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[INDOLE_ACETATE_AUXIN]][c]
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* [[RXN-15680]]
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* With common name(s):
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** 11 associated gene(s):
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** 1 indole-3-acetonitrile[c] '''+''' 2 H2O[c] '''=>''' 1 ammonium[c] '''+''' 1 indole-3-acetate[c]
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*** [[Tiso_gene_19791]]
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*** [[Tiso_gene_2775]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_3233]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_20110]]
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* [[Tiso_gene_10996]]
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*** [[Tiso_gene_5129]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_8508]]
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***AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_6036]]
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** [[pantograph]]-[[athaliana]]
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*** [[Tiso_gene_8509]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[Tiso_gene_19041]]
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== Pathways  ==
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*** [[Tiso_gene_1104]]
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* [[PWY-581]], indole-3-acetate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-581 PWY-581]
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*** [[Tiso_gene_8389]]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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** 3 reconstruction source(s) associated:
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* [[PWY-5026]], indole-3-acetate biosynthesis V (bacteria and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5026 PWY-5026]
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*** [[annotation-experimental_annotation]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[PWYQT-4476]], indole glucosinolate activation (herbivore attack): [http://metacyc.org/META/NEW-IMAGE?object=PWYQT-4476 PWYQT-4476]
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*** [[orthology-esiliculosus]]
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** '''1''' reactions found over '''13''' reactions in the full pathway
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* [[RXN-15684]]
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== Reconstruction information  ==
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** 13 associated gene(s):
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* [[orthology]]:
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*** [[Tiso_gene_4530]]
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** [[pantograph]]:
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*** [[Tiso_gene_16192]]
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*** [[athaliana]]
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*** [[Tiso_gene_12454]]
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*** [[esiliculosus]]
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*** [[Tiso_gene_20164]]
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* [[annotation]]:
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*** [[Tiso_gene_7321]]
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** [[pathwaytools]]:
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*** [[Tiso_gene_9472]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_20163]]
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*** [[Tiso_gene_12069]]
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*** [[Tiso_gene_13846]]
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*** [[Tiso_gene_8416]]
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*** [[Tiso_gene_3314]]
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*** [[Tiso_gene_17069]]
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*** [[Tiso_gene_13847]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15678 RXN-15678]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15679 RXN-15679]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15681 RXN-15681]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15682 RXN-15682]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15683 RXN-15683]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15685 RXN-15685]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15686 RXN-15686]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-1131492}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03093 R03093]
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{{#set: taxonomic range=TAX-4751}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=gliotoxin biosynthesis}}
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{{#set: common name=nitrilase}}
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{{#set: reaction found=2}}
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{{#set: ec number=EC-3.5.5.1}}
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{{#set: total reaction=9}}
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{{#set: gene associated=Tiso_gene_10996}}
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{{#set: completion rate=22.0}}
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{{#set: in pathway=PWY-581|PWY-5026|PWYQT-4476}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 19:03, 18 March 2018

Pathway PWY-7533

Reaction(s) found

2 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12959&oldid=21571"