Difference between revisions of "Tiso gene 10584"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUC1PURIDYLTRANS-RXN GLUC1PURIDYLTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** utp--g...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUC1PURIDYLTRANS-RXN GLUC1PURIDYLTRANS-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861] ==
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* direction:
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* taxonomic range:
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** utp--glucose-1-phosphate_uridylyltransferase
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** formaldehyde assimilation II (RuMP Cycle)
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** dp-n-acetylglucosamine_pyrophosphorylase
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** f-box_lrr-repeat_protein_13-like
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.7.64 EC-2.7.7.64]
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** [http://enzyme.expasy.org/EC/2.7.7.9 EC-2.7.7.9]
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* Synonym(s):
 
* Synonym(s):
 +
** ribulose monophosphate cycle
 +
** formaldehyde assimilation
 +
** RuMP pathway
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''9''' reactions in the full pathway
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** 1 [[UTP]][c] '''+''' 1 [[GLC-1-P]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-12575]][c]
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* [[1TRANSKETO-RXN]]
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* With common name(s):
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** 2 associated gene(s):
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** 1 UTP[c] '''+''' 1 &alpha;-D-glucopyranose 1-phosphate[c] '''+''' 1 H+[c] '''<=>''' 1 diphosphate[c] '''+''' 1 UDP-&alpha;-D-glucose[c]
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*** [[Tiso_gene_5008]]
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*** [[Tiso_gene_11559]]
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== Genes associated with this reaction  ==
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** 5 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_5879]]
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*** [[orthology-athaliana]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***AUTOMATED-NAME-MATCH
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*** [[orthology-synechocystis]]
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* [[Tiso_gene_17531]]
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*** [[manual-primary_network]]
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** IN-SILICO_ANNOTATION
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* [[2TRANSKETO-RXN]]
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***EC-NUMBER
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** 2 associated gene(s):
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* [[Tiso_gene_17566]]
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*** [[Tiso_gene_11559]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_5008]]
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***EC-NUMBER
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** 5 reconstruction source(s) associated:
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[manual-primary_network]]
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* [[Tiso_gene_14796]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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* [[6PFRUCTPHOS-RXN]]
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***EC-NUMBER
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** 2 associated gene(s):
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_5733]]
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***EC-NUMBER
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*** [[Tiso_gene_596]]
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** [[pantograph]]-[[athaliana]]
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** 6 reconstruction source(s) associated:
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* [[Tiso_gene_6457]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_13477]]
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[manual-primary_network]]
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* [[Tiso_gene_4816]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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* [[F16ALDOLASE-RXN]]
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* [[Tiso_gene_6458]]
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** 6 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_65]]
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***EC-NUMBER
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*** [[Tiso_gene_9119]]
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* [[Tiso_gene_6459]]
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*** [[Tiso_gene_9179]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_12272]]
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***EC-NUMBER
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*** [[Tiso_gene_14568]]
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* [[Tiso_gene_11401]]
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*** [[Tiso_gene_9118]]
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** [[pantograph]]-[[esiliculosus]]
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** 5 reconstruction source(s) associated:
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* [[Tiso_gene_7102]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[manual-primary_network]]
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* [[Tiso_gene_7440]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_9110]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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* [[RIB5PISOM-RXN]]
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***EC-NUMBER
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** 1 associated gene(s):
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_18217]]
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***EC-NUMBER
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** 5 reconstruction source(s) associated:
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** [[pantograph]]-[[athaliana]]
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*** [[orthology-athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_16930]]
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*** [[orthology-synechocystis]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***AUTOMATED-NAME-MATCH
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*** [[manual-primary_network]]
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== Pathways  ==
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* [[RIBULP3EPIM-RXN]]
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* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817]
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** 3 associated gene(s):
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** '''7''' reactions found over '''16''' reactions in the full pathway
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*** [[Tiso_gene_4754]]
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* [[PWY-3801]], sucrose degradation II (sucrose synthase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3801 PWY-3801]
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*** [[Tiso_gene_19140]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[Tiso_gene_10879]]
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* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
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** 7 reconstruction source(s) associated:
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** '''7''' reactions found over '''7''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
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*** [[orthology-esiliculosus]]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[PWY-7343]], UDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7343 PWY-7343]
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*** [[orthology-athaliana]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** [[orthology-synechocystis]]
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== Reconstruction information  ==
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*** [[manual-primary_network]]
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* [[orthology]]:
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*** [[orthology-creinhardtii]]
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** [[pantograph]]:
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* [[TRANSALDOL-RXN]]
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*** [[esiliculosus]]
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** 2 associated gene(s):
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*** [[athaliana]]
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*** [[Tiso_gene_17601]]
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* [[annotation]]:
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*** [[Tiso_gene_1831]]
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** [[pathwaytools]]:
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** 6 reconstruction source(s) associated:
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*** [[experimental_annotation]]
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*** [[annotation-experimental_annotation]]
−
*** [[in-silico_annotation]]
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*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
 +
*** [[manual-primary_network]]
 +
*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=R10-RXN R10-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=R12-RXN R12-RXN]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19889 19889]
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{{#set: common name=formaldehyde assimilation II (RuMP Cycle)}}
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* PIR:
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{{#set: common name=ribulose monophosphate cycle|formaldehyde assimilation|RuMP pathway}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A40650 A40650]
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{{#set: reaction found=7}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41382 A41382]
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{{#set: total reaction=9}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A56146 A56146]
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{{#set: completion rate=78.0}}
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64250 A64250]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A64970 A64970]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A75096 A75096]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D49349 D49349]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D69184 D69184]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D70601 D70601]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E64466 E64466]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E71913 E71913]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F59102 F59102]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64600 F64600]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F81300 F81300]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64095 G64095]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G70125 G70125]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H70446 H70446]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC2265 JC2265]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4785 JC4785]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JC4985 JC4985]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=JX0277 JX0277]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S15298 S15298]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S30007 S30007]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S31431 S31431]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S35692 S35692]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41533 S41533]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S62599 S62599]
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−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S73501 S73501]
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−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78541 S78541]
+
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T42521 T42521]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T44841 T44841]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45453 T45453]
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XNDOU XNDOU]
+
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** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=XNPOU XNPOU]
+
−
* LIGAND-RXN:
+
−
** [http://www.genome.jp/dbget-bin/www_bget?R00289 R00289]
+
−
* UNIPROT:
+
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** [http://www.uniprot.org/uniprot/Q05852 Q05852]
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** [http://www.uniprot.org/uniprot/P27897 P27897]
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** [http://www.uniprot.org/uniprot/Q48447 Q48447]
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** [http://www.uniprot.org/uniprot/P47691 P47691]
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** [http://www.uniprot.org/uniprot/P0AAB6 P0AAB6]
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** [http://www.uniprot.org/uniprot/Q9UZI7 Q9UZI7]
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** [http://www.uniprot.org/uniprot/P33696 P33696]
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** [http://www.uniprot.org/uniprot/O26731 O26731]
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** [http://www.uniprot.org/uniprot/O05576 O05576]
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−
** [http://www.uniprot.org/uniprot/Q58730 Q58730]
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** [http://www.uniprot.org/uniprot/Q9ZLI8 Q9ZLI8]
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** [http://www.uniprot.org/uniprot/Q9X364 Q9X364]
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** [http://www.uniprot.org/uniprot/O25363 O25363]
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** [http://www.uniprot.org/uniprot/Q9PMD3 Q9PMD3]
+
−
** [http://www.uniprot.org/uniprot/P44878 P44878]
+
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** [http://www.uniprot.org/uniprot/O51225 O51225]
+
−
** [http://www.uniprot.org/uniprot/O67602 O67602]
+
−
** [http://www.uniprot.org/uniprot/P0AEP3 P0AEP3]
+
−
** [http://www.uniprot.org/uniprot/Q43772 Q43772]
+
−
** [http://www.uniprot.org/uniprot/P74969 P74969]
+
−
** [http://www.uniprot.org/uniprot/Q07130 Q07130]
+
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** [http://www.uniprot.org/uniprot/P32861 P32861]
+
−
** [http://www.uniprot.org/uniprot/P19595 P19595]
+
−
** [http://www.uniprot.org/uniprot/Q07131 Q07131]
+
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** [http://www.uniprot.org/uniprot/P37776 P37776]
+
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** [http://www.uniprot.org/uniprot/P75124 P75124]
+
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** [http://www.uniprot.org/uniprot/Q46768 Q46768]
+
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** [http://www.uniprot.org/uniprot/P78811 P78811]
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** [http://www.uniprot.org/uniprot/Q9RMC3 Q9RMC3]
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** [http://www.uniprot.org/uniprot/Q9Z5G1 Q9Z5G1]
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** [http://www.uniprot.org/uniprot/P08800 P08800]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=utp--glucose-1-phosphate_uridylyltransferase}}
+
−
{{#set: common name=dp-n-acetylglucosamine_pyrophosphorylase}}
+
−
{{#set: common name=f-box_lrr-repeat_protein_13-like}}
+
−
{{#set: ec number=EC-2.7.7.64}}
+
−
{{#set: ec number=EC-2.7.7.9}}
+
−
{{#set: gene associated=Tiso_gene_5879|Tiso_gene_17531|Tiso_gene_17566|Tiso_gene_14796|Tiso_gene_6457|Tiso_gene_13477|Tiso_gene_4816|Tiso_gene_6458|Tiso_gene_6459|Tiso_gene_11401|Tiso_gene_7102|Tiso_gene_7440|Tiso_gene_9110|Tiso_gene_16930}}
+
−
{{#set: in pathway=PWY-7817|PWY-3801|PWY-6527|PWY-7238|PWY-7343}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus|athaliana}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:03, 18 March 2018

Pathway PWY-1861

  • taxonomic range:
  • common name:
    • formaldehyde assimilation II (RuMP Cycle)
  • Synonym(s):
    • ribulose monophosphate cycle
    • formaldehyde assimilation
    • RuMP pathway

Reaction(s) found

7 reactions found over 9 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_10584&oldid=21599"