Difference between revisions of "2TRANSKETO-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERLEU-RXN BRANCHED-CHAINAMINOTRANSFERLEU-RXN] == * direction: ** REVERSIBL...")
(Created page with "Category:Gene == Gene Tiso_gene_2775 == * left end position: ** 16196 * transcription direction: ** POSITIVE * right end position: ** 17424 * centisome position: ** 87.640...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERLEU-RXN BRANCHED-CHAINAMINOTRANSFERLEU-RXN] ==
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== Gene Tiso_gene_2775 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 16196
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* common name:
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* transcription direction:
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** branched-chain_amino_acid_aminotransferase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.6.1.6 EC-2.6.1.6]
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** 17424
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** [http://enzyme.expasy.org/EC/2.6.1.42 EC-2.6.1.42]
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* centisome position:
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** 87.64070   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[GSHTRAN-RXN]]
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** 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[LEU]][c] '''<=>''' 1 [[2K-4CH3-PENTANOATE]][c] '''+''' 1 [[GLT]][c]
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** in-silico_annotation
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* With common name(s):
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***automated-name-match
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** 1 2-oxoglutarate[c] '''+''' 1 L-leucine[c] '''<=>''' 1 4-methyl-2-oxopentanoate[c] '''+''' 1 L-glutamate[c]
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** [[pantograph]]-[[athaliana]]
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* [[GST-RXN]]
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== Genes associated with this reaction  ==
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** in-silico_annotation
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Genes have been associated with this reaction based on different elements listed below.
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***automated-name-match
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* [[Tiso_gene_14984]]
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* [[RXN-13673]]
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** IN-SILICO_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***automated-name-match
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** EXPERIMENTAL_ANNOTATION
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* [[RXN-15680]]
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***EC-NUMBER
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** in-silico_annotation
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** [[pantograph]]-[[synechocystis]]
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***automated-name-match
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** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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* [[Tiso_gene_18403]]
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* [[PWY-7112]]
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** [[pantograph]]-[[synechocystis]]
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* [[PWY-6842]]
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== Pathways  ==
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* [[PWY-4061]]
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* [[PWY-5076]], L-leucine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5076 PWY-5076]
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* [[PWY-7533]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7767]], leucine degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7767 PWY-7767]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=16196}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18321 18321]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=17424}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01090 R01090]
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{{#set: centisome position=87.64070    }}
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* UNIPROT:
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{{#set: reaction associated=GSHTRAN-RXN|GST-RXN|RXN-13673|RXN-15680}}
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
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{{#set: pathway associated=PWY-7112|PWY-6842|PWY-4061|PWY-7533}}
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** [http://www.uniprot.org/uniprot/P38891 P38891]
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** [http://www.uniprot.org/uniprot/P47176 P47176]
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** [http://www.uniprot.org/uniprot/O86505 O86505]
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** [http://www.uniprot.org/uniprot/O14370 O14370]
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** [http://www.uniprot.org/uniprot/O32954 O32954]
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** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=branched-chain_amino_acid_aminotransferase}}
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{{#set: ec number=EC-2.6.1.6}}
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{{#set: ec number=EC-2.6.1.42}}
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{{#set: gene associated=Tiso_gene_14984|Tiso_gene_18403}}
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{{#set: in pathway=PWY-5076|PWY-7767|LEU-DEG2-PWY|LEUSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:11, 18 March 2018

Gene Tiso_gene_2775

  • left end position:
    • 16196
  • transcription direction:
    • POSITIVE
  • right end position:
    • 17424
  • centisome position:
    • 87.64070
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=2TRANSKETO-RXN&oldid=22550"