Difference between revisions of "MRNAs-With-PolyA-Tails"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10781 RXN-10781] == * direction: ** LEFT-TO-RIGHT * common name: ** 5-hydroxytryptophol dehydro...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=EPOXYSQUALENE EPOXYSQUALENE] == * smiles: ** CC(C)=CCCC(C)=CCCC(C)=CCCC=C(C)CCC=C(C)CC[CH]1(C(C...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10781 RXN-10781] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=EPOXYSQUALENE EPOXYSQUALENE] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC(C)=CCCC(C)=CCCC(C)=CCCC=C(C)CCC=C(C)CC[CH]1(C(C)(C)O1)
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* inchi key:
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** InChIKey=QYIMSPSDBYKPPY-RSKUXYSASA-N
 
* common name:
 
* common name:
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** 5-hydroxytryptophol dehydrogenase
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** (3S)-2,3-epoxy-2,3-dihydrosqualene
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** polyketide_synthase
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* molecular weight:
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** ORF
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** 426.724   
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.1 EC-1.1.1.1]
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* Synonym(s):
 
* Synonym(s):
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** squalene 2,3-epoxide
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** squalene 2,3-oxide
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** (S)-squalene-2,3-epoxide
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** 2,3-EDSQ
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** 2,3-epoxisqualene
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** oxidosqualene
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** 2,3-oxidosqualene
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** (3S)-2,3-epoxysqualene
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[CYCLOARTENOL-SYNTHASE-RXN]]
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** 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[5-HYDROXYINDOLE_ACETALDEHYDE]][c] '''=>''' 1 [[CPD-11671]][c] '''+''' 1 [[NAD]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 NADH[c] '''+''' 1 H+[c] '''+''' 1 5-hydroxyindole acetaldehyde[c] '''=>''' 1 5-hydroxytryptophol[c] '''+''' 1 NAD+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_7649]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6562]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6563]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5425]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5424]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-6313]], serotonin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6313 PWY-6313]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* CAS : 9029-62-3
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{{#set: common name=5-hydroxytryptophol dehydrogenase}}
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* PUBCHEM:
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{{#set: common name=polyketide_synthase}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5459811 5459811]
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{{#set: common name=ORF}}
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* HMDB : HMDB01188
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{{#set: ec number=EC-1.1.1.1}}
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* LIGAND-CPD:
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{{#set: gene associated=Tiso_gene_7649|Tiso_gene_6562|Tiso_gene_6563|Tiso_gene_5425|Tiso_gene_5424}}
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** [http://www.genome.jp/dbget-bin/www_bget?C01054 C01054]
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{{#set: in pathway=PWY-6313}}
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* CHEMSPIDER:
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{{#set: reconstruction category=annotation}}
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** [http://www.chemspider.com/Chemical-Structure.4444080.html 4444080]
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{{#set: reconstruction tool=pathwaytools}}
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* CHEBI:
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{{#set: reconstruction source=in-silico_annotation}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15441 15441]
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* METABOLIGHTS : MTBLC15441
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{{#set: smiles=CC(C)=CCCC(C)=CCCC(C)=CCCC=C(C)CCC=C(C)CC[CH]1(C(C)(C)O1)}}
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{{#set: inchi key=InChIKey=QYIMSPSDBYKPPY-RSKUXYSASA-N}}
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{{#set: common name=(3S)-2,3-epoxy-2,3-dihydrosqualene}}
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{{#set: molecular weight=426.724    }}
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{{#set: common name=squalene 2,3-epoxide|squalene 2,3-oxide|(S)-squalene-2,3-epoxide|2,3-EDSQ|2,3-epoxisqualene|oxidosqualene|2,3-oxidosqualene|(3S)-2,3-epoxysqualene}}
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{{#set: consumed by=CYCLOARTENOL-SYNTHASE-RXN}}

Revision as of 18:15, 18 March 2018

Metabolite EPOXYSQUALENE

  • smiles:
    • CC(C)=CCCC(C)=CCCC(C)=CCCC=C(C)CCC=C(C)CC[CH]1(C(C)(C)O1)
  • inchi key:
    • InChIKey=QYIMSPSDBYKPPY-RSKUXYSASA-N
  • common name:
    • (3S)-2,3-epoxy-2,3-dihydrosqualene
  • molecular weight:
    • 426.724
  • Synonym(s):
    • squalene 2,3-epoxide
    • squalene 2,3-oxide
    • (S)-squalene-2,3-epoxide
    • 2,3-EDSQ
    • 2,3-epoxisqualene
    • oxidosqualene
    • 2,3-oxidosqualene
    • (3S)-2,3-epoxysqualene

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 9029-62-3
  • PUBCHEM:
  • HMDB : HMDB01188
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC15441
"CC(C)=CCCC(C)=CCCC(C)=CCCC=C(C)CCC=C(C)CC[CH]1(C(C)(C)O1)" cannot be used as a page name in this wiki.



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