Difference between revisions of "TransportSeed CU+"

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(Created page with "Category:Gene == Gene Tiso_gene_9642 == * left end position: ** 104 * transcription direction: ** POSITIVE * right end position: ** 1464 * centisome position: ** 1.1357431...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3052 TAX-3052...")
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[[Category:Gene]]
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[[Category:Pathway]]
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== Gene Tiso_gene_9642 ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY] ==
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* left end position:
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* taxonomic range:
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** 104
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3052 TAX-3052]
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* transcription direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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** POSITIVE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* right end position:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-68336 TAX-68336]
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** 1464
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-200783 TAX-200783]
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* centisome position:
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* common name:
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** 1.1357431   
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** reductive TCA cycle I
 
* Synonym(s):
 
* Synonym(s):
 +
** reductive tricarboxylic acid cycle
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** reductive tricarboxylic acid pathway
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** reductive citric acid cycle
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** reverse citric acid cycle
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** carbon fixation
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** CO2 fixation
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** reductive carboxylic acid cycle
  
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== Reactions associated ==
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== Reaction(s) found ==
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* [[RXN0-302]]
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'''7''' reactions found over '''12''' reactions in the full pathway
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** in-silico_annotation
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* [[ACONITATEDEHYDR-RXN]]
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***ec-number
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** 1 associated gene(s):
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** experimental_annotation
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*** [[Tiso_gene_13007]]
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***ec-number
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** 3 reconstruction source(s) associated:
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** [[pantograph]]-[[synechocystis]]
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[creinhardtii]]
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*** [[orthology-synechocystis]]
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== Pathways associated ==
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* [[ACONITATEHYDR-RXN]]
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* [[NONMEVIPP-PWY]]
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** 1 associated gene(s):
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* [[PWY-7560]]
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*** [[Tiso_gene_13007]]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[FUMHYDR-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_6720]]
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*** [[Tiso_gene_3691]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ISOCITDEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_18262]]
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*** [[Tiso_gene_10809]]
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** 4 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
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*** [[manual-primary_network]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_1990]]
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*** [[Tiso_gene_2323]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[PEPSYNTH-RXN]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[SUCCCOASYN-RXN]]
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** 2 associated gene(s):
 +
*** [[Tiso_gene_15846]]
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*** [[Tiso_gene_11866]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
 +
== Reaction(s) not found ==
 +
* [http://metacyc.org/META/NEW-IMAGE?object=2-OXOGLUTARATE-SYNTHASE-RXN 2-OXOGLUTARATE-SYNTHASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=ATP-CITRATE-PRO-S--LYASE-RXN ATP-CITRATE-PRO-S--LYASE-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
 +
* [http://metacyc.org/META/NEW-IMAGE?object=PYRUFLAVREDUCT-RXN PYRUFLAVREDUCT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R601-RXN R601-RXN]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=104}}
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{{#set: taxonomic range=TAX-3052}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: taxonomic range=TAX-1224}}
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{{#set: right end position=1464}}
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{{#set: taxonomic range=TAX-2157}}
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{{#set: centisome position=1.1357431    }}
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{{#set: taxonomic range=TAX-68336}}
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{{#set: reaction associated=RXN0-302}}
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{{#set: taxonomic range=TAX-200783}}
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{{#set: pathway associated=NONMEVIPP-PWY|PWY-7560}}
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{{#set: common name=reductive TCA cycle I}}
 +
{{#set: common name=reductive tricarboxylic acid cycle|reductive tricarboxylic acid pathway|reductive citric acid cycle|reverse citric acid cycle|carbon fixation|CO2 fixation|reductive carboxylic acid cycle}}
 +
{{#set: reaction found=7}}
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{{#set: total reaction=12}}
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{{#set: completion rate=58.0}}

Revision as of 18:16, 18 March 2018

Pathway P23-PWY

  • taxonomic range:
  • common name:
    • reductive TCA cycle I
  • Synonym(s):
    • reductive tricarboxylic acid cycle
    • reductive tricarboxylic acid pathway
    • reductive citric acid cycle
    • reverse citric acid cycle
    • carbon fixation
    • CO2 fixation
    • reductive carboxylic acid cycle

Reaction(s) found

7 reactions found over 12 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=TransportSeed_CU%2B&oldid=23079"