Difference between revisions of "Tiso gene 3686"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] == * direction: ** LEFT-TO-RIGHT * common name: ** carotene_isomerase ** caroten...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.135-RXN 2.4.1.135-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: **...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.4.1.135-RXN 2.4.1.135-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** carotene_isomerase
+
** ORF
−
** carotenoid_isomerase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.2.1.13 EC-5.2.1.13]
+
** [http://enzyme.expasy.org/EC/2.4.1.135 EC-2.4.1.135]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-7496]][c] '''=>''' 1 [[CPD1F-114]][c]
+
** 1 [[Gal-Gal-Xyl-Proteins]][c] '''+''' 1 [[UDP-GLUCURONATE]][c] '''=>''' 1 [[GlcA-Gal-Gal-Xyl-Proteins]][c] '''+''' 1 [[UDP]][c] '''+''' 1 [[PROTON]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 prolycopene[c] '''=>''' 1 all-trans-lycopene[c]
+
** 1 a [protein]-3-O-(β-D-galactosyl-(1→3)-β-D-galactosyl-(1→4)-β-D-xylosyl)-L-serine[c] '''+''' 1 UDP-α-D-glucuronate[c] '''=>''' 1 a [protein]-3-O-(β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] '''+''' 1 UDP[c] '''+''' 1 H+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13367]]
+
* [[Tiso_gene_4139]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
−
* [[Tiso_gene_15802]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_917]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_13369]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_916]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_915]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
+
* [[PWY-6557]], glycosaminoglycan-protein linkage region biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6557 PWY-6557]
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30974 30974]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07512 R07512]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=carotene_isomerase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=carotenoid_isomerase}}
+
{{#set: ec number=EC-2.4.1.135}}
−
{{#set: ec number=EC-5.2.1.13}}
+
{{#set: gene associated=Tiso_gene_4139}}
−
{{#set: gene associated=Tiso_gene_13367|Tiso_gene_15802|Tiso_gene_917|Tiso_gene_13369|Tiso_gene_916|Tiso_gene_915}}
+
{{#set: in pathway=PWY-6557}}
−
{{#set: in pathway=PWY-6475}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Revision as of 19:18, 18 March 2018

Reaction 2.4.1.135-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a [protein]-3-O-(β-D-galactosyl-(1→3)-β-D-galactosyl-(1→4)-β-D-xylosyl)-L-serine[c] + 1 UDP-α-D-glucuronate[c] => 1 a [protein]-3-O-(β-D-GlcA-(1→3)-β-D-Gal-(1→3)-β-D-Gal-(1→4)-β-D-Xyl)-L-serine[c] + 1 UDP[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6557, glycosaminoglycan-protein linkage region biosynthesis: PWY-6557
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_3686&oldid=23380"