Difference between revisions of "PWY-6693"

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(Created page with "Category:Gene == Gene Tiso_gene_14582 == * left end position: ** 1023 * transcription direction: ** NEGATIVE * right end position: ** 3121 * centisome position: ** 18.4125...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9674 RXN-9674] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-glucosidase-like_chlorop...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_14582 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9674 RXN-9674] ==
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* left end position:
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* direction:
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** 1023
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** beta-glucosidase-like_chloroplastic
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* right end position:
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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** 3121
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** ORF
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* centisome position:
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** beta_glucosidase
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** 18.412527   
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[1.5.1.20-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[CPD-10277]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-12699]][c] '''+''' 1 [[Glucopyranose]][c]
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***ec-number
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* With common name(s):
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** experimental_annotation
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** 1 lotaustralin[c] '''+''' 1 H2O[c] '''=>''' 1 (2R)-2-hydroxy-2-methylbutanenitrile[c] '''+''' 1 D-glucopyranose[c]
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***ec-number
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_8669]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15066]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13306]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2843]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_3467]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6007]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10001]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6188]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2344]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6497]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[MTHFO]]
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* [[Tiso_gene_13305]]
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** [[pantograph]]-[[creinhardtii]]
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** IN-SILICO_ANNOTATION
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* [[MTHFO_nadp]]
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***EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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** EXPERIMENTAL_ANNOTATION
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== Pathways associated ==
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***EC-NUMBER
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* [[PWY-2201]]
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* [[Tiso_gene_6187]]
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* [[1CMET2-PWY]]
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** IN-SILICO_ANNOTATION
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* [[CODH-PWY]]
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***EC-NUMBER
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* [[PWY-3841]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_15067]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5836]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-7092]], neolinustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7092 PWY-7092]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6002]], lotaustralin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6002 PWY-6002]
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** '''1''' reactions found over '''2''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=1023}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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{{#set: right end position=3121}}
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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{{#set: centisome position=18.412527    }}
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{{#set: common name=ORF}}
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{{#set: reaction associated=1.5.1.20-RXN|MTHFO|MTHFO_nadp}}
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{{#set: common name=beta_glucosidase}}
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{{#set: pathway associated=PWY-2201|1CMET2-PWY|CODH-PWY|PWY-3841}}
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{{#set: ec number=EC-3.2.1.21}}
 +
{{#set: gene associated=Tiso_gene_8669|Tiso_gene_15066|Tiso_gene_13306|Tiso_gene_2843|Tiso_gene_3467|Tiso_gene_6007|Tiso_gene_10001|Tiso_gene_6188|Tiso_gene_2344|Tiso_gene_6497|Tiso_gene_13305|Tiso_gene_6187|Tiso_gene_15067|Tiso_gene_5836}}
 +
{{#set: in pathway=PWY-7092|PWY-6002}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 19:19, 18 March 2018

Reaction RXN-9674

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • beta-glucosidase-like_chloroplastic
    • low_quality_protein:_beta-glucosidase-like_chloroplastic-like
    • ORF
    • beta_glucosidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 lotaustralin[c] + 1 H2O[c] => 1 (2R)-2-hydroxy-2-methylbutanenitrile[c] + 1 D-glucopyranose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7092, neolinustatin bioactivation: PWY-7092
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6002, lotaustralin degradation: PWY-6002
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-6693&oldid=23462"