Difference between revisions of "DNA-3-methyladenines"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1803 RXN3O-1803] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-synthase ** pol...")
(Created page with "Category:Gene == Gene Tiso_gene_6562 == * left end position: ** 1810 * transcription direction: ** POSITIVE * right end position: ** 2419 * centisome position: ** 15.01950...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN3O-1803 RXN3O-1803] ==
+
== Gene Tiso_gene_6562 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 1810
−
* common name:
+
* transcription direction:
−
** 3-oxoacyl-synthase
+
** POSITIVE
−
** polyketide_synthase
+
* right end position:
−
* ec number:
+
** 2419
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
* centisome position:
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
** 15.019500   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* [[1.2.1.31-RXN]]
−
** 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Palmitoyl-ACPs]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[3-oxo-stearoyl-ACPs]][c] '''+''' 1 [[ACP]][c]
+
** in-silico_annotation
−
* With common name(s):
+
***ec-number
−
** 1 a malonyl-[acp][c] '''+''' 1 H+[c] '''+''' 1 a palmitoyl-[acp][c] '''=>''' 1 CO2[c] '''+''' 1 a 3-oxo-stearoyl-[acp][c] '''+''' 1 a holo-[acyl-carrier protein][c]
+
* [[ALCOHOL-DEHYDROG-GENERIC-RXN]]
−
 
+
** in-silico_annotation
−
== Genes associated with this reaction  ==
+
***ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[ALCOHOL-DEHYDROG-RXN]]
−
* [[Tiso_gene_10876]]
+
** in-silico_annotation
−
** IN-SILICO_ANNOTATION
+
***ec-number
−
***EC-NUMBER
+
* [[ALLYSINE-DEHYDROG-RXN]]
−
* [[Tiso_gene_14485]]
+
** in-silico_annotation
−
** [[pantograph]]-[[athaliana]]
+
***ec-number
−
** [[pantograph]]-[[synechocystis]]
+
* [[L-IDITOL-2-DEHYDROGENASE-RXN]]
−
** [[pantograph]]-[[esiliculosus]]
+
** in-silico_annotation
−
* [[Tiso_gene_15991]]
+
***ec-number
−
** [[pantograph]]-[[esiliculosus]]
+
* [[PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN]]
−
* [[Tiso_gene_13394]]
+
** in-silico_annotation
−
** IN-SILICO_ANNOTATION
+
***ec-number
−
***EC-NUMBER
+
* [[RXN-10781]]
−
* [[Tiso_gene_135]]
+
** in-silico_annotation
−
** IN-SILICO_ANNOTATION
+
***ec-number
−
***EC-NUMBER
+
* [[RXN-10855]]
−
* [[Tiso_gene_19302]]
+
** in-silico_annotation
−
** [[pantograph]]-[[athaliana]]
+
***ec-number
−
** [[pantograph]]-[[synechocystis]]
+
* [[RXN-10911]]
−
** [[pantograph]]-[[esiliculosus]]
+
** in-silico_annotation
−
* [[Tiso_gene_5939]]
+
***ec-number
−
** IN-SILICO_ANNOTATION
+
* [[RXN-10915]]
−
***EC-NUMBER
+
** in-silico_annotation
−
** EXPERIMENTAL_ANNOTATION
+
***ec-number
−
***EC-NUMBER
+
* [[RXN-12448]]
−
* [[Tiso_gene_500]]
+
** in-silico_annotation
−
** IN-SILICO_ANNOTATION
+
***ec-number
−
***EC-NUMBER
+
* [[RXN-12560]]
−
* [[Tiso_gene_136]]
+
** in-silico_annotation
−
** IN-SILICO_ANNOTATION
+
***ec-number
−
***EC-NUMBER
+
* [[RXN-13198]]
−
== Pathways  ==
+
** in-silico_annotation
−
* [[PWY3O-355]], stearate biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-355 PWY3O-355]
+
***ec-number
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
* [[RXN-13279]]
−
== Reconstruction information  ==
+
** in-silico_annotation
−
* [[orthology]]:
+
***ec-number
−
** [[pantograph]]:
+
* [[RXN-5424]]
−
*** [[synechocystis]]
+
** in-silico_annotation
−
*** [[athaliana]]
+
***ec-number
−
*** [[esiliculosus]]
+
* [[RXN-5901]]
−
* [[manual]]:
+
** in-silico_annotation
−
** [[primary_network]]
+
***ec-number
−
* [[annotation]]:
+
* [[RXN-7644]]
−
** [[pathwaytools]]:
+
** in-silico_annotation
−
*** [[experimental_annotation]]
+
***ec-number
−
*** [[in-silico_annotation]]
+
* [[RXN-7657]]
 +
** in-silico_annotation
 +
***ec-number
 +
* [[RXN-7693]]
 +
** in-silico_annotation
 +
***ec-number
 +
* [[RXN-7694]]
 +
** in-silico_annotation
 +
***ec-number
 +
* [[RXN-7700]]
 +
** in-silico_annotation
 +
***ec-number
 +
* [[RXN-7706]]
 +
** in-silico_annotation
 +
***ec-number
 +
* [[RXN3O-4113]]
 +
** in-silico_annotation
 +
***ec-number
 +
* [[RXN66-478]]
 +
** in-silico_annotation
 +
***ec-number
 +
== Pathways associated ==
 +
* [[PWY66-21]]
 +
* [[PWY-7111]]
 +
* [[PWY-6587]]
 +
* [[PWY-5676]]
 +
* [[PWY-5082]]
 +
* [[PWY-7118]]
 +
* [[PWY-7013]]
 +
* [[PWY-3162]]
 +
* [[PWY-5751]]
 +
* [[PWY-6342]]
 +
* [[PWY1-3]]
 +
* [[P161-PWY]]
 +
* [[ETOH-ACETYLCOA-ANA-PWY]]
 +
* [[FERMENTATION-PWY]]
 +
* [[PWY-6871]]
 +
* [[PWY-7396]]
 +
* [[PWY-5057]]
 +
* [[PWY-5741]]
 +
* [[PWY-5076]]
 +
* [[PWY-6333]]
 +
* [[PWY-5486]]
 +
* [[PWY-5079]]
 +
* [[PWY-5078]]
 +
* [[PWY-6313]]
 +
* [[PWY66-425]]
 +
* [[PWY-5480]]
 +
* [[PWY3O-4108]]
 +
* [[PWY-7216]]
 +
* [[PWY-6802]]
 +
* [[LYSINE-DEG1-PWY]]
 +
* [[P122-PWY]]
 +
* [[PWY66-389]]
 +
* [[PWY4LZ-257]]
 +
* [[PWY-4101]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: left end position=1810}}
−
{{#set: common name=3-oxoacyl-synthase}}
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: right end position=2419}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: centisome position=15.019500    }}
−
{{#set: ec number=EC-2.3.1.41}}
+
{{#set: reaction associated=1.2.1.31-RXN|ALCOHOL-DEHYDROG-GENERIC-RXN|ALCOHOL-DEHYDROG-RXN|ALLYSINE-DEHYDROG-RXN|L-IDITOL-2-DEHYDROGENASE-RXN|PROTEIN-TYROSINE-SULFOTRANSFERASE-RXN|RXN-10781|RXN-10855|RXN-10911|RXN-10915|RXN-12448|RXN-12560|RXN-13198|RXN-13279|RXN-5424|RXN-5901|RXN-7644|RXN-7657|RXN-7693|RXN-7694|RXN-7700|RXN-7706|RXN3O-4113|RXN66-478}}
−
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_14485|Tiso_gene_15991|Tiso_gene_13394|Tiso_gene_135|Tiso_gene_19302|Tiso_gene_5939|Tiso_gene_500|Tiso_gene_136}}
+
{{#set: pathway associated=PWY66-21|PWY-7111|PWY-6587|PWY-5676|PWY-5082|PWY-7118|PWY-7013|PWY-3162|PWY-5751|PWY-6342|PWY1-3|P161-PWY|ETOH-ACETYLCOA-ANA-PWY|FERMENTATION-PWY|PWY-6871|PWY-7396|PWY-5057|PWY-5741|PWY-5076|PWY-6333|PWY-5486|PWY-5079|PWY-5078|PWY-6313|PWY66-425|PWY-5480|PWY3O-4108|PWY-7216|PWY-6802|LYSINE-DEG1-PWY|P122-PWY|PWY66-389|PWY4LZ-257|PWY-4101}}
−
{{#set: in pathway=PWY3O-355}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis|athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:21, 18 March 2018

Gene Tiso_gene_6562

  • left end position:
    • 1810
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2419
  • centisome position:
    • 15.019500
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DNA-3-methyladenines&oldid=23720"