Difference between revisions of "Tiso gene 2386"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.21.4-RXN 3.4.21.4-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** trypsin_family ** try...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.21.4-RXN 3.4.21.4-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPARTATE--TRNA-LIGASE-RXN ASPARTATE--TRNA-LIGASE-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** trypsin_family
+
** aspartyl-trna_synthetase
−
** trypsin
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.4.21.4 EC-3.4.21.4]
+
** [http://enzyme.expasy.org/EC/6.1.1.12 EC-6.1.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[General-Protein-Substrates]][c] '''=>''' 1 [[Peptides-holder]][c]
+
** 1 [[ASP-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ASPARTATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[Charged-ASP-tRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a protein[c] '''=>''' 1 a peptide[c]
+
** 1 tRNAasp[c] '''+''' 1 ATP[c] '''+''' 1 L-aspartate[c] '''=>''' 1 AMP[c] '''+''' 1 diphosphate[c] '''+''' 1 an L-aspartyl-[tRNAasp][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_1761]]
+
* [[Tiso_gene_17185]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_13074]]
+
* [[Tiso_gene_7126]]
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_12875]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_17883]]
+
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_2777]]
+
* [[Tiso_gene_13081]]
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4147]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
−
* [[Tiso_gene_8820]]
+
** EXPERIMENTAL_ANNOTATION
−
** [[pantograph]]-[[esiliculosus]]
+
***EC-NUMBER
−
* [[Tiso_gene_1997]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_20549]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_1341]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_19324]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_4842]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13684]]
+
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19649 19649]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R05577 R05577]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P07477 P07477]
+
** [http://www.uniprot.org/uniprot/P56459 P56459]
−
** [http://www.uniprot.org/uniprot/P08426 P08426]
+
** [http://www.uniprot.org/uniprot/O26328 O26328]
−
** [http://www.uniprot.org/uniprot/P35051 P35051]
+
** [http://www.uniprot.org/uniprot/O83950 O83950]
−
** [http://www.uniprot.org/uniprot/P19799 P19799]
+
** [http://www.uniprot.org/uniprot/Q58950 Q58950]
−
** [http://www.uniprot.org/uniprot/Q7M434 Q7M434]
+
** [http://www.uniprot.org/uniprot/Q9ZLL9 Q9ZLL9]
−
** [http://www.uniprot.org/uniprot/Q7M435 Q7M435]
+
** [http://www.uniprot.org/uniprot/O32038 O32038]
−
** [http://www.uniprot.org/uniprot/Q7M390 Q7M390]
+
** [http://www.uniprot.org/uniprot/O67589 O67589]
−
** [http://www.uniprot.org/uniprot/Q7LZP8 Q7LZP8]
+
** [http://www.uniprot.org/uniprot/P43817 P43817]
−
** [http://www.uniprot.org/uniprot/Q7LZF8 Q7LZF8]
+
** [http://www.uniprot.org/uniprot/O51402 O51402]
−
** [http://www.uniprot.org/uniprot/Q7M433 Q7M433]
+
** [http://www.uniprot.org/uniprot/Q9CE80 Q9CE80]
−
** [http://www.uniprot.org/uniprot/P07146 P07146]
+
** [http://www.uniprot.org/uniprot/Q9ZE17 Q9ZE17]
−
** [http://www.uniprot.org/uniprot/P07478 P07478]
+
** [http://www.uniprot.org/uniprot/Q9X1F4 Q9X1F4]
−
** [http://www.uniprot.org/uniprot/Q7M3N1 Q7M3N1]
+
** [http://www.uniprot.org/uniprot/Q9JT23 Q9JT23]
−
** [http://www.uniprot.org/uniprot/Q7M432 Q7M432]
+
** [http://www.uniprot.org/uniprot/O58776 O58776]
−
** [http://www.uniprot.org/uniprot/P32821 P32821]
+
** [http://www.uniprot.org/uniprot/O84546 O84546]
−
** [http://www.uniprot.org/uniprot/P32822 P32822]
+
** [http://www.uniprot.org/uniprot/Q9Z7P2 Q9Z7P2]
−
** [http://www.uniprot.org/uniprot/P12788 P12788]
+
** [http://www.uniprot.org/uniprot/Q9PHM7 Q9PHM7]
−
** [http://www.uniprot.org/uniprot/P35050 P35050]
+
** [http://www.uniprot.org/uniprot/P47282 P47282]
−
** [http://www.uniprot.org/uniprot/Q29463 Q29463]
+
** [http://www.uniprot.org/uniprot/Q51422 Q51422]
−
** [http://www.uniprot.org/uniprot/P35034 P35034]
+
** [http://www.uniprot.org/uniprot/Q03577 Q03577]
−
** [http://www.uniprot.org/uniprot/P35031 P35031]
+
** [http://www.uniprot.org/uniprot/P36429 P36429]
−
** [http://www.uniprot.org/uniprot/P35032 P35032]
+
** [http://www.uniprot.org/uniprot/P75068 P75068]
−
** [http://www.uniprot.org/uniprot/P35033 P35033]
+
** [http://www.uniprot.org/uniprot/P73851 P73851]
−
** [http://www.uniprot.org/uniprot/P35030 P35030]
+
** [http://www.uniprot.org/uniprot/Q48979 Q48979]
−
** [http://www.uniprot.org/uniprot/P35035 P35035]
+
** [http://www.uniprot.org/uniprot/Q49028 Q49028]
−
** [http://www.uniprot.org/uniprot/P35036 P35036]
+
** [http://www.uniprot.org/uniprot/P04802 P04802]
−
** [http://www.uniprot.org/uniprot/P16049 P16049]
+
** [http://www.uniprot.org/uniprot/P15179 P15179]
−
** [http://www.uniprot.org/uniprot/Q91041 Q91041]
+
** [http://www.uniprot.org/uniprot/P21889 P21889]
−
** [http://www.uniprot.org/uniprot/P35038 P35038]
+
** [http://www.uniprot.org/uniprot/P14868 P14868]
−
** [http://www.uniprot.org/uniprot/P35041 P35041]
+
** [http://www.uniprot.org/uniprot/P15178 P15178]
−
** [http://www.uniprot.org/uniprot/P35037 P35037]
+
** [http://www.uniprot.org/uniprot/O81892 O81892]
−
** [http://www.uniprot.org/uniprot/Q92099 Q92099]
+
** [http://www.uniprot.org/uniprot/O74407 O74407]
−
** [http://www.uniprot.org/uniprot/Q27761 Q27761]
+
** [http://www.uniprot.org/uniprot/O07683 O07683]
−
** [http://www.uniprot.org/uniprot/Q90629 Q90629]
+
−
** [http://www.uniprot.org/uniprot/Q90628 Q90628]
+
−
** [http://www.uniprot.org/uniprot/Q90627 Q90627]
+
−
** [http://www.uniprot.org/uniprot/Q7M436 Q7M436]
+
−
** [http://www.uniprot.org/uniprot/P35045 P35045]
+
−
** [http://www.uniprot.org/uniprot/P00765 P00765]
+
−
** [http://www.uniprot.org/uniprot/P00764 P00764]
+
−
** [http://www.uniprot.org/uniprot/P06872 P06872]
+
−
** [http://www.uniprot.org/uniprot/P06871 P06871]
+
−
** [http://www.uniprot.org/uniprot/P00761 P00761]
+
−
** [http://www.uniprot.org/uniprot/P00762 P00762]
+
−
** [http://www.uniprot.org/uniprot/P00763 P00763]
+
−
** [http://www.uniprot.org/uniprot/P00775 P00775]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=trypsin_family}}
+
{{#set: common name=aspartyl-trna_synthetase}}
−
{{#set: common name=trypsin}}
+
{{#set: ec number=EC-6.1.1.12}}
−
{{#set: ec number=EC-3.4.21.4}}
+
{{#set: gene associated=Tiso_gene_17185|Tiso_gene_7126|Tiso_gene_13081}}
−
{{#set: gene associated=Tiso_gene_1761|Tiso_gene_13074|Tiso_gene_12875|Tiso_gene_17883|Tiso_gene_2777|Tiso_gene_4147|Tiso_gene_8820|Tiso_gene_1997|Tiso_gene_20549|Tiso_gene_1341|Tiso_gene_19324|Tiso_gene_4842|Tiso_gene_13684}}
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Revision as of 18:21, 18 March 2018

Reaction ASPARTATE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • aspartyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 tRNAasp[c] + 1 ATP[c] + 1 L-aspartate[c] => 1 AMP[c] + 1 diphosphate[c] + 1 an L-aspartyl-[tRNAasp][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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