Difference between revisions of "PWY0-1544"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5901 RXN-5901] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase * ec numb...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5901 RXN-5901] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** polyketide_synthase
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** fatty acid salvage
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.1.36 EC-1.1.1.36]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''6''' reactions in the full pathway
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** 1 [[ACETOACETYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[CPD-650]][c]
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* [[RXN-12490]]
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* With common name(s):
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** 6 associated gene(s):
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** 1 acetoacetyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 NADPH[c] '''=>''' 1 NADP+[c] '''+''' 1 (3R)-3-hydroxybutanoyl-CoA[c]
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*** [[Tiso_gene_14027]]
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*** [[Tiso_gene_18838]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_18839]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_14262]]
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* [[Tiso_gene_6563]]
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*** [[Tiso_gene_14026]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_5857]]
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***EC-NUMBER
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** 5 reconstruction source(s) associated:
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* [[Tiso_gene_10876]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-athaliana]]
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_6562]]
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*** [[orthology-creinhardtii]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[RXN-13614]]
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* [[Tiso_gene_500]]
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** 9 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_135]]
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***EC-NUMBER
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*** [[Tiso_gene_10876]]
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* [[Tiso_gene_5425]]
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*** [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_4191]]
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***EC-NUMBER
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*** [[Tiso_gene_7855]]
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* [[Tiso_gene_136]]
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*** [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_500]]
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***EC-NUMBER
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*** [[Tiso_gene_13394]]
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* [[Tiso_gene_5424]]
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*** [[Tiso_gene_9394]]
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** IN-SILICO_ANNOTATION
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** 3 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* [[Tiso_gene_13394]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***EC-NUMBER
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* [[RXN-13615]]
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* [[Tiso_gene_135]]
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** 6 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_6475]]
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***EC-NUMBER
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*** [[Tiso_gene_18566]]
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== Pathways  ==
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*** [[Tiso_gene_883]]
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* [[PWY-5741]], ethylmalonyl-CoA pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5741 PWY-5741]
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*** [[Tiso_gene_16631]]
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** '''2''' reactions found over '''11''' reactions in the full pathway
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*** [[Tiso_gene_5991]]
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* [[PWY1-3]], polyhydroxybutanoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1-3 PWY1-3]
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*** [[Tiso_gene_17967]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** 2 reconstruction source(s) associated:
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* [[PWY-7216]], (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7216 PWY-7216]
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*** [[annotation-experimental_annotation]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[PWY-5676]], acetyl-CoA fermentation to butanoate II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5676 PWY-5676]
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* [[RXN-13616]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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** 3 associated gene(s):
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== Reconstruction information  ==
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*** [[Tiso_gene_6885]]
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* [[annotation]]:
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*** [[Tiso_gene_14262]]
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** [[pathwaytools]]:
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*** [[Tiso_gene_16145]]
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*** [[in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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* [[RXN-13617]]
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** 6 associated gene(s):
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*** [[Tiso_gene_15327]]
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*** [[Tiso_gene_3855]]
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*** [[Tiso_gene_17451]]
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*** [[Tiso_gene_10116]]
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*** [[Tiso_gene_16181]]
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*** [[Tiso_gene_3856]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13613 RXN-13613]
 
== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01977 R01977]
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{{#set: common name=fatty acid salvage}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=5}}
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{{#set: common name=polyketide_synthase}}
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{{#set: total reaction=6}}
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{{#set: ec number=EC-1.1.1.36}}
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{{#set: completion rate=83.0}}
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{{#set: gene associated=Tiso_gene_6563|Tiso_gene_10876|Tiso_gene_6562|Tiso_gene_500|Tiso_gene_5425|Tiso_gene_136|Tiso_gene_5424|Tiso_gene_13394|Tiso_gene_135}}
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{{#set: in pathway=PWY-5741|PWY1-3|PWY-7216|PWY-5676}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 18:27, 18 March 2018

Pathway PWY-7094

  • taxonomic range:
  • common name:
    • fatty acid salvage
  • Synonym(s):

Reaction(s) found

5 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY0-1544&oldid=24447"