Difference between revisions of "PWY-7118"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** delta-1-pyrroline-5-...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7242 PWY-7242] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7242 PWY-7242] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** ORF
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** D-fructuronate degradation
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** delta-1-pyrroline-5-carboxylate_synthase
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** delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
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* ec number:
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** [http://enzyme.expasy.org/EC/1.2.1.88 EC-1.2.1.88]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''4''' reactions in the full pathway
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** 1 [[WATER]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[NADH]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[GLT]][c]
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* [[KDPGALDOL-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 H2O[c] '''+''' 1 L-glutamate-5-semialdehyde[c] '''+''' 1 NAD+[c] '''=>''' 1 NADH[c] '''+''' 2 H+[c] '''+''' 1 L-glutamate[c]
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*** [[Tiso_gene_12620]]
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** 1 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[MANNONDEHYDRAT-RXN]]
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* [[Tiso_gene_7381]]
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** 1 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_8331]]
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***EC-NUMBER
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** 1 reconstruction source(s) associated:
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** EXPERIMENTAL_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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== Reaction(s) not found ==
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* [[Tiso_gene_18338]]
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* [http://metacyc.org/META/NEW-IMAGE?object=DEOXYGLUCONOKIN-RXN DEOXYGLUCONOKIN-RXN]
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=MANNONOXIDOREDUCT-RXN MANNONOXIDOREDUCT-RXN]
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***EC-NUMBER
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* [[Tiso_gene_3513]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_9680]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_18337]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16634]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_886]]
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** [[pantograph]]-[[synechocystis]]
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* [[Tiso_gene_6952]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways  ==
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* [[PROUT-PWY]], L-proline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PROUT-PWY PROUT-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6853]], ethylene biosynthesis II (microbes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6853 PWY-6853]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[synechocystis]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* ECOCYC:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30236 30236]
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7242 PWY-7242]
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00245 R00245]
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{{#set: common name=D-fructuronate degradation}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=2}}
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{{#set: common name=ORF}}
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{{#set: total reaction=4}}
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{{#set: common name=delta-1-pyrroline-5-carboxylate_synthase}}
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{{#set: completion rate=50.0}}
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{{#set: common name=delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial}}
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{{#set: ec number=EC-1.2.1.88}}
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{{#set: gene associated=Tiso_gene_7381|Tiso_gene_18338|Tiso_gene_3513|Tiso_gene_9680|Tiso_gene_18337|Tiso_gene_16634|Tiso_gene_886|Tiso_gene_6952}}
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{{#set: in pathway=PROUT-PWY|ARGASEDEG-PWY|PWY-6853}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=synechocystis}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:28, 18 March 2018

Pathway PWY-7242

  • taxonomic range:
  • common name:
    • D-fructuronate degradation
  • Synonym(s):

Reaction(s) found

2 reactions found over 4 reactions in the full pathway

Reaction(s) not found

External links



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