Difference between revisions of "Tiso gene 1625"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALPHAGALACTOSID-RXN ALPHAGALACTOSID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** alpha-g...")
(Created page with "Category:Gene == Gene Tiso_gene_5046 == * left end position: ** 8481 * transcription direction: ** POSITIVE * right end position: ** 11340 * centisome position: ** 60.6956...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALPHAGALACTOSID-RXN ALPHAGALACTOSID-RXN] ==
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== Gene Tiso_gene_5046 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 8481
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* common name:
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* transcription direction:
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** alpha-galactosidase
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/3.2.1.22 EC-3.2.1.22]
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** 11340
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* centisome position:
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** 60.695625   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[6.1.1.24-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[MELIBIOSE]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[D-galactopyranose]][c]
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* With common name(s):
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** 1 H2O[c] '''+''' 1 melibiose[c] '''=>''' 1 D-glucopyranose[c] '''+''' 1 D-galactopyranose[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_3392]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_2588]]
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** [[pantograph]]-[[athaliana]]
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* [[Tiso_gene_4615]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_16101]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_8673]]
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** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[GLURS-RXN]]
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== Pathways  ==
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** in-silico_annotation
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* [[PWY0-1301]], melibiose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1301 PWY0-1301]
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***ec-number
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** '''1''' reactions found over '''1''' reactions in the full pathway
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** experimental_annotation
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== Reconstruction information  ==
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***ec-number
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* [[orthology]]:
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== Pathways associated ==
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** [[pantograph]]:
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* [[TRNA-CHARGING-PWY]]
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*** [[creinhardtii]]
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* [[PWY-5188]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=8481}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28663 28663]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=11340}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01101 R01101]
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{{#set: centisome position=60.695625    }}
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* UNIPROT:
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{{#set: reaction associated=6.1.1.24-RXN|GLURS-RXN}}
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** [http://www.uniprot.org/uniprot/P16551 P16551]
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{{#set: pathway associated=TRNA-CHARGING-PWY|PWY-5188}}
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** [http://www.uniprot.org/uniprot/P27756 P27756]
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** [http://www.uniprot.org/uniprot/P04824 P04824]
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** [http://www.uniprot.org/uniprot/P06720 P06720]
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** [http://www.uniprot.org/uniprot/P06280 P06280]
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** [http://www.uniprot.org/uniprot/P51569 P51569]
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** [http://www.uniprot.org/uniprot/O93816 O93816]
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** [http://www.uniprot.org/uniprot/Q03647 Q03647]
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** [http://www.uniprot.org/uniprot/P14749 P14749]
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** [http://www.uniprot.org/uniprot/P28351 P28351]
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** [http://www.uniprot.org/uniprot/P43467 P43467]
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** [http://www.uniprot.org/uniprot/Q99172 Q99172]
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** [http://www.uniprot.org/uniprot/P41945 P41945]
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** [http://www.uniprot.org/uniprot/P41946 P41946]
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** [http://www.uniprot.org/uniprot/P41947 P41947]
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** [http://www.uniprot.org/uniprot/Q92457 Q92457]
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** [http://www.uniprot.org/uniprot/Q92456 Q92456]
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** [http://www.uniprot.org/uniprot/Q92451 Q92451]
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** [http://www.uniprot.org/uniprot/O04943 O04943]
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** [http://www.uniprot.org/uniprot/O04944 O04944]
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** [http://www.uniprot.org/uniprot/Q39811 Q39811]
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** [http://www.uniprot.org/uniprot/Q41100 Q41100]
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** [http://www.uniprot.org/uniprot/Q42656 Q42656]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=alpha-galactosidase}}
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{{#set: ec number=EC-3.2.1.22}}
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{{#set: gene associated=Tiso_gene_3392|Tiso_gene_2588|Tiso_gene_4615|Tiso_gene_16101|Tiso_gene_8673}}
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{{#set: in pathway=PWY0-1301}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|athaliana|esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 19:28, 18 March 2018

Gene Tiso_gene_5046

  • left end position:
    • 8481
  • transcription direction:
    • POSITIVE
  • right end position:
    • 11340
  • centisome position:
    • 60.695625
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1625&oldid=24681"