Difference between revisions of "PWY-5079"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTATHIONE-SYN-RXN GLUTATHIONE-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutath...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTATHIONE-SYN-RXN GLUTATHIONE-SYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** glutathione_synthetase
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** UMP biosynthesis II
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* ec number:
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** [http://enzyme.expasy.org/EC/6.3.2.3 EC-6.3.2.3]
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* Synonym(s):
 
* Synonym(s):
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** uridine-5'-phosphate biosynthesis II
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** de novo biosynthesis of uridine-5'-phosphate II
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** de novo biosynthesis of uridine-5'-monophosphate II
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''6''' reactions found over '''6''' reactions in the full pathway
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** 1 [[ATP]][c] '''+''' 1 [[L-GAMMA-GLUTAMYLCYSTEINE]][c] '''+''' 1 [[GLY]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GLUTATHIONE]][c]
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* [[ASPCARBTRANS-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 ATP[c] '''+''' 1 γ-L-glutamyl-L-cysteine[c] '''+''' 1 glycine[c] '''=>''' 1 phosphate[c] '''+''' 1 H+[c] '''+''' 1 ADP[c] '''+''' 1 glutathione[c]
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*** [[Tiso_gene_13527]]
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** 7 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_14848]]
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*** [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** [[orthology-athaliana]]
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***EC-NUMBER
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*** [[orthology-synechocystis]]
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** [[pantograph]]-[[athaliana]]
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*** [[manual-primary_network]]
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** [[pantograph]]-[[esiliculosus]]
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*** [[orthology-creinhardtii]]
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** [[pantograph]]-[[creinhardtii]]
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* [[CARBPSYN-RXN]]
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* [[Tiso_gene_6906]]
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** 3 associated gene(s):
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_4976]]
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***EC-NUMBER
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*** [[Tiso_gene_4975]]
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* [[Tiso_gene_6905]]
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*** [[Tiso_gene_4685]]
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** IN-SILICO_ANNOTATION
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** 4 reconstruction source(s) associated:
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***EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* [[Tiso_gene_12276]]
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*** [[manual-primary_network]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[DIHYDROOROT-RXN]]
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* [[GLUTATHIONESYN-PWY]], glutathione biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GLUTATHIONESYN-PWY GLUTATHIONESYN-PWY]
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** 1 associated gene(s):
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** [[Tiso_gene_15379]]
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== Reconstruction information  ==
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** 5 reconstruction source(s) associated:
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* [[orthology]]:
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*** [[annotation-experimental_annotation]]
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** [[pantograph]]:
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*** [[manual-primary_network]]
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*** [[creinhardtii]]
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*** [[orthology-creinhardtii]]
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*** [[esiliculosus]]
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*** [[orthology-synechocystis]]
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*** [[athaliana]]
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*** [[annotation-in-silico_annotation]]
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* [[annotation]]:
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* [[OROPRIBTRANS-RXN]]
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** [[pathwaytools]]:
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** 3 associated gene(s):
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*** [[experimental_annotation]]
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*** [[Tiso_gene_11163]]
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*** [[in-silico_annotation]]
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*** [[Tiso_gene_11164]]
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*** [[Tiso_gene_18647]]
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** 4 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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* [[OROTPDECARB-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_20050]]
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*** [[Tiso_gene_18647]]
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** 5 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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*** [[manual-primary_network]]
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* [[RXN-9929]]
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** 1 associated gene(s):
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*** [[Tiso_gene_5280]]
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** 1 reconstruction source(s) associated:
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*** [[orthology-synechocystis]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-33682}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13557 13557]
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{{#set: taxonomic range=TAX-4751}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00497 R00497]
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{{#set: common name=UMP biosynthesis II}}
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* UNIPROT:
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{{#set: common name=uridine-5'-phosphate biosynthesis II|de novo biosynthesis of uridine-5'-phosphate II|de novo biosynthesis of uridine-5'-monophosphate II}}
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** [http://www.uniprot.org/uniprot/Q9JTJ6 Q9JTJ6]
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{{#set: reaction found=6}}
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** [http://www.uniprot.org/uniprot/P46413 P46413]
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{{#set: total reaction=6}}
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** [http://www.uniprot.org/uniprot/P45480 P45480]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P35667 P35667]
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** [http://www.uniprot.org/uniprot/P35669 P35669]
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** [http://www.uniprot.org/uniprot/P35668 P35668]
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** [http://www.uniprot.org/uniprot/P48637 P48637]
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** [http://www.uniprot.org/uniprot/P46416 P46416]
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** [http://www.uniprot.org/uniprot/P51855 P51855]
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** [http://www.uniprot.org/uniprot/P73493 P73493]
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** [http://www.uniprot.org/uniprot/P04425 P04425]
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** [http://www.uniprot.org/uniprot/O22494 O22494]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glutathione_synthetase}}
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{{#set: ec number=EC-6.3.2.3}}
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{{#set: gene associated=Tiso_gene_14848|Tiso_gene_6906|Tiso_gene_6905|Tiso_gene_12276}}
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{{#set: in pathway=GLUTATHIONESYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|esiliculosus|athaliana}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:30, 18 March 2018

Pathway PWY-7790

  • taxonomic range:
  • common name:
    • UMP biosynthesis II
  • Synonym(s):
    • uridine-5'-phosphate biosynthesis II
    • de novo biosynthesis of uridine-5'-phosphate II
    • de novo biosynthesis of uridine-5'-monophosphate II

Reaction(s) found

6 reactions found over 6 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-5079&oldid=24850"