Difference between revisions of "PEPTIDOGLYCANSYN-PWY"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1118 TAX-11...")
 
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] == * direction: ** LEFT-TO-RIGHT * common name: ** all-trans retinyl-ester hyd...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12575 RXN-12575] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1118 TAX-1118]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1217 TAX-1217]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
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* common name:
 
* common name:
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** partial TCA cycle (obligate autotrophs)
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** all-trans retinyl-ester hydrolase
 +
** ORF
 +
** serine_esterase
 +
** alpha_beta_hydrolase
 +
** sialate_o-acetylesterase-like_protein
 +
** lysophospholipase
 +
** protein_chloroplastic
 +
** alpha_beta_hydrolase_fold_protein
 +
** para-nitrobenzyl_esterase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
 
* Synonym(s):
 
* Synonym(s):
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** TCA cycle VI (obligate autotrophs)
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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* '''9''' reaction(s) found
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* With identifiers:
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** [[ISOCITDEH-RXN]]
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** 1 [[All-trans-Retinyl-Esters]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13524]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Long-Chain-Fatty-Acids]][c]
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** [[ASPAMINOTRANS-RXN]]
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* With common name(s):
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** [[MALATE-DEH-RXN]]
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** 1 an all-trans-retinyl ester[c] '''+''' 1 H2O[c] '''=>''' 1 all-trans-retinol[c] '''+''' 1 H+[c] '''+''' 1 a long-chain fatty acid[c]
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** [[ACONITATEDEHYDR-RXN]]
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** [[ACONITATEHYDR-RXN]]
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== Genes associated with this reaction  ==
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** [[CITSYN-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[SUCCCOASYN-RXN]]
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* [[Tiso_gene_1922]]
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** [[GLUTDEHYD-RXN]]
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** IN-SILICO_ANNOTATION
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** [[FUMHYDR-RXN]]
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***EC-NUMBER
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== Reaction(s) not found ==
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* [[Tiso_gene_2556]]
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* '''2''' reaction(s) not found
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** IN-SILICO_ANNOTATION
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** [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOX-RXN PEPCARBOX-RXN]
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***EC-NUMBER
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** [http://metacyc.org/META/NEW-IMAGE?object=RXN-14970 RXN-14970]
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* [[Tiso_gene_4606]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10066]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9429]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_16518]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19778]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_4650]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1538]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_12686]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_1537]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17029]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_11351]]
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
 +
* [[PWY-6857]], retinol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6857 PWY-6857]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* [[orthology]]:
 +
** [[pantograph]]:
 +
*** [[esiliculosus]]
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* [[annotation]]:
 +
** [[pathwaytools]]:
 +
*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-1118}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-1217}}
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{{#set: common name=all-trans retinyl-ester hydrolase}}
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{{#set: taxonomic range=TAX-1224}}
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{{#set: common name=ORF}}
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{{#set: common name=partial TCA cycle (obligate autotrophs)}}
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{{#set: common name=serine_esterase}}
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{{#set: common name=TCA cycle VI (obligate autotrophs)}}
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{{#set: common name=alpha_beta_hydrolase}}
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{{#set: reaction found=9}}
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{{#set: common name=sialate_o-acetylesterase-like_protein}}
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{{#set: reaction not found=2}}
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{{#set: common name=lysophospholipase}}
 +
{{#set: common name=protein_chloroplastic}}
 +
{{#set: common name=alpha_beta_hydrolase_fold_protein}}
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{{#set: common name=para-nitrobenzyl_esterase}}
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{{#set: ec number=EC-3.1.1.1}}
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{{#set: gene associated=Tiso_gene_1922|Tiso_gene_2556|Tiso_gene_4606|Tiso_gene_10066|Tiso_gene_9429|Tiso_gene_16518|Tiso_gene_19778|Tiso_gene_4650|Tiso_gene_1538|Tiso_gene_12686|Tiso_gene_1537|Tiso_gene_17029|Tiso_gene_11351}}
 +
{{#set: in pathway=PWY-6857}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}

Revision as of 15:34, 10 January 2018

Reaction RXN-12575

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • all-trans retinyl-ester hydrolase
    • ORF
    • serine_esterase
    • alpha_beta_hydrolase
    • sialate_o-acetylesterase-like_protein
    • lysophospholipase
    • protein_chloroplastic
    • alpha_beta_hydrolase_fold_protein
    • para-nitrobenzyl_esterase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6857, retinol biosynthesis: PWY-6857
    • 3 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PEPTIDOGLYCANSYN-PWY&oldid=9628"