Difference between revisions of "CPD0-341"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] == * direction: ** REVERSIBLE * common name: ** dna_topoisomerase ** dna...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] == * direction: ** REVERSIBLE * common name: ** dna_topoisomerase ** dna...") |
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== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
| + | * [[Tiso_gene_5035]] | ||
| + | ** IN-SILICO_ANNOTATION | ||
| + | ***AUTOMATED-NAME-MATCH | ||
* [[Tiso_gene_5747]] | * [[Tiso_gene_5747]] | ||
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
***AUTOMATED-NAME-MATCH | ***AUTOMATED-NAME-MATCH | ||
| − | * [[ | + | * [[Tiso_gene_1739]] |
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
***EC-NUMBER | ***EC-NUMBER | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
* [[Tiso_gene_3425]] | * [[Tiso_gene_3425]] | ||
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
***EC-NUMBER | ***EC-NUMBER | ||
** [[pantograph]]-[[esiliculosus]] | ** [[pantograph]]-[[esiliculosus]] | ||
| − | * [[ | + | * [[Tiso_gene_1740]] |
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
| − | *** | + | ***EC-NUMBER |
| − | + | ||
** [[pantograph]]-[[esiliculosus]] | ** [[pantograph]]-[[esiliculosus]] | ||
| − | * [[ | + | * [[Tiso_gene_14333]] |
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
***AUTOMATED-NAME-MATCH | ***AUTOMATED-NAME-MATCH | ||
| − | * [[ | + | * [[Tiso_gene_5036]] |
| − | + | ||
| − | + | ||
| − | + | ||
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
***AUTOMATED-NAME-MATCH | ***AUTOMATED-NAME-MATCH | ||
| Line 55: | Line 48: | ||
***EC-NUMBER | ***EC-NUMBER | ||
** [[pantograph]]-[[esiliculosus]] | ** [[pantograph]]-[[esiliculosus]] | ||
| − | * [[ | + | * [[Tiso_gene_1291]] |
| + | ** [[pantograph]]-[[esiliculosus]] | ||
| + | * [[Tiso_gene_5748]] | ||
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
| − | *** | + | ***AUTOMATED-NAME-MATCH |
* [[Tiso_gene_5749]] | * [[Tiso_gene_5749]] | ||
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
| + | ***AUTOMATED-NAME-MATCH | ||
| + | * [[Tiso_gene_6569]] | ||
| + | ** IN-SILICO_ANNOTATION | ||
| + | ***AUTOMATED-NAME-MATCH | ||
| + | ** EXPERIMENTAL_ANNOTATION | ||
***AUTOMATED-NAME-MATCH | ***AUTOMATED-NAME-MATCH | ||
== Pathways == | == Pathways == | ||
== Reconstruction information == | == Reconstruction information == | ||
| − | * [[orthology]] | + | * Category: [[orthology]] |
| − | ** [[ | + | ** Source: [[orthology-esiliculosus]] |
| − | *** [[ | + | *** Tool: [[pantograph]] |
| − | * [[annotation]]: | + | * Category: [[annotation]] |
| − | ** [[pathwaytools]] | + | ** Source: [[annotation-in-silico_annotation]] |
| − | ** | + | *** Tool: [[pathwaytools]] |
| − | *** [[ | + | ** Source: [[annotation-experimental_annotation]] |
| + | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
* UNIPROT: | * UNIPROT: | ||
| Line 110: | Line 111: | ||
{{#set: common name=dna_topoisomerase1}} | {{#set: common name=dna_topoisomerase1}} | ||
{{#set: ec number=EC-5.99.1.2}} | {{#set: ec number=EC-5.99.1.2}} | ||
| − | {{#set: gene associated=Tiso_gene_5747| | + | {{#set: gene associated=Tiso_gene_5035|Tiso_gene_5747|Tiso_gene_1739|Tiso_gene_3425|Tiso_gene_1740|Tiso_gene_14333|Tiso_gene_5036|Tiso_gene_200|Tiso_gene_10513|Tiso_gene_1291|Tiso_gene_5748|Tiso_gene_5749|Tiso_gene_6569}} |
{{#set: in pathway=}} | {{#set: in pathway=}} | ||
| − | {{#set: reconstruction category=orthology | + | {{#set: reconstruction category=orthology|annotation}} |
| − | + | {{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}} | |
| − | {{#set: reconstruction source=esiliculosus | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
| − | + | ||
| − | {{#set: reconstruction tool=pathwaytools | + | |
| − | + | ||
Revision as of 19:31, 18 March 2018
Contents
Reaction 5.99.1.2-RXN
- direction:
- REVERSIBLE
- common name:
- dna_topoisomerase
- dna_topoisomerase1
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 Negatively-super-coiled-DNAs[c] <=> 1 Relaxed-DNAs[c]
- With common name(s):
- 1 a negatively supercoiled DNA[c] <=> 1 a relaxed DNA[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Tiso_gene_5035
- IN-SILICO_ANNOTATION
- AUTOMATED-NAME-MATCH
- IN-SILICO_ANNOTATION
- Tiso_gene_5747
- IN-SILICO_ANNOTATION
- AUTOMATED-NAME-MATCH
- IN-SILICO_ANNOTATION
- Tiso_gene_1739
- IN-SILICO_ANNOTATION
- EC-NUMBER
- IN-SILICO_ANNOTATION
- Tiso_gene_3425
- IN-SILICO_ANNOTATION
- EC-NUMBER
- pantograph-esiliculosus
- IN-SILICO_ANNOTATION
- Tiso_gene_1740
- IN-SILICO_ANNOTATION
- EC-NUMBER
- pantograph-esiliculosus
- IN-SILICO_ANNOTATION
- Tiso_gene_14333
- IN-SILICO_ANNOTATION
- AUTOMATED-NAME-MATCH
- IN-SILICO_ANNOTATION
- Tiso_gene_5036
- IN-SILICO_ANNOTATION
- AUTOMATED-NAME-MATCH
- IN-SILICO_ANNOTATION
- Tiso_gene_200
- IN-SILICO_ANNOTATION
- AUTOMATED-NAME-MATCH
- IN-SILICO_ANNOTATION
- Tiso_gene_10513
- EXPERIMENTAL_ANNOTATION
- EC-NUMBER
- pantograph-esiliculosus
- EXPERIMENTAL_ANNOTATION
- Tiso_gene_1291
- Tiso_gene_5748
- IN-SILICO_ANNOTATION
- AUTOMATED-NAME-MATCH
- IN-SILICO_ANNOTATION
- Tiso_gene_5749
- IN-SILICO_ANNOTATION
- AUTOMATED-NAME-MATCH
- IN-SILICO_ANNOTATION
- Tiso_gene_6569
- IN-SILICO_ANNOTATION
- AUTOMATED-NAME-MATCH
- EXPERIMENTAL_ANNOTATION
- AUTOMATED-NAME-MATCH
- IN-SILICO_ANNOTATION
Pathways
Reconstruction information
- Category: orthology
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-esiliculosus
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links
- UNIPROT:
