Difference between revisions of "RXN1G-287"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** indole3-glycerol_phosphat...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10059 RXN-10059] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-synthase * ec num...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=IGPSYN-RXN IGPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10059 RXN-10059] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** indole3-glycerol_phosphate_synthase
+
** 3-oxoacyl-synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.48 EC-4.1.1.48]
+
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CARBOXYPHENYLAMINO-DEOXYRIBULOSE-P]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[Lignoceroyl-ACPs]][c] '''=>''' 1 [[3-oxo-cerotoyl-ACPs]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate[c] '''+''' 1 H+[c] '''=>''' 1 (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate[c] '''+''' 1 H2O[c] '''+''' 1 CO2[c]
+
** 1 H+[c] '''+''' 1 malonyl-CoA[c] '''+''' 1 a lignoceroyl-[acp][c] '''=>''' 1 a 3-oxo-cerotoyl-[acp][c] '''+''' 1 coenzyme A[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10298]]
+
* [[Tiso_gene_5939]]
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10297]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
** EXPERIMENTAL_ANNOTATION
−
** [[pantograph]]-[[synechocystis]]
+
***EC-NUMBER
 +
* [[Tiso_gene_14485]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_4521]]
+
* [[Tiso_gene_19302]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
+
* [[Tiso_gene_15991]]
−
* [[Tiso_gene_18384]]
+
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[TRPSYN-PWY]], L-tryptophan biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=TRPSYN-PWY TRPSYN-PWY]
+
* [[PWY-6113]], superpathway of mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6113 PWY-6113]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
 +
** '''86''' reactions found over '''182''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[creinhardtii]]
+
*** Tool: [[pantograph]]
−
*** [[synechocystis]]
+
* Category: [[annotation]]
−
*** [[athaliana]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[manual]]:
+
** Source: [[annotation-in-silico_annotation]]
−
** [[primary_network]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23476 23476]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03508 R03508]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P42393 P42393]
 
−
** [http://www.uniprot.org/uniprot/P20577 P20577]
 
−
** [http://www.uniprot.org/uniprot/P18304 P18304]
 
−
** [http://www.uniprot.org/uniprot/Q06121 Q06121]
 
−
** [http://www.uniprot.org/uniprot/Q9V1G3 Q9V1G3]
 
−
** [http://www.uniprot.org/uniprot/P20578 P20578]
 
−
** [http://www.uniprot.org/uniprot/Q9PI11 Q9PI11]
 
−
** [http://www.uniprot.org/uniprot/Q58328 Q58328]
 
−
** [http://www.uniprot.org/uniprot/Q9JSN4 Q9JSN4]
 
−
** [http://www.uniprot.org/uniprot/P03964 P03964]
 
−
** [http://www.uniprot.org/uniprot/P00910 P00910]
 
−
** [http://www.uniprot.org/uniprot/P00909 P00909]
 
−
** [http://www.uniprot.org/uniprot/P00911 P00911]
 
−
** [http://www.uniprot.org/uniprot/P17217 P17217]
 
−
** [http://www.uniprot.org/uniprot/P20409 P20409]
 
−
** [http://www.uniprot.org/uniprot/P00937 P00937]
 
−
** [http://www.uniprot.org/uniprot/P00908 P00908]
 
−
** [http://www.uniprot.org/uniprot/P05328 P05328]
 
−
** [http://www.uniprot.org/uniprot/P06531 P06531]
 
−
** [http://www.uniprot.org/uniprot/P18483 P18483]
 
−
** [http://www.uniprot.org/uniprot/P25170 P25170]
 
−
** [http://www.uniprot.org/uniprot/P26938 P26938]
 
−
** [http://www.uniprot.org/uniprot/P24773 P24773]
 
−
** [http://www.uniprot.org/uniprot/Q01999 Q01999]
 
−
** [http://www.uniprot.org/uniprot/Q9YGB5 Q9YGB5]
 
−
** [http://www.uniprot.org/uniprot/Q9S591 Q9S591]
 
−
** [http://www.uniprot.org/uniprot/Q9X7C7 Q9X7C7]
 
−
** [http://www.uniprot.org/uniprot/Q92370 Q92370]
 
−
** [http://www.uniprot.org/uniprot/Q9ZFA7 Q9ZFA7]
 
−
** [http://www.uniprot.org/uniprot/P94327 P94327]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=indole3-glycerol_phosphate_synthase}}
+
{{#set: common name=3-oxoacyl-synthase}}
−
{{#set: ec number=EC-4.1.1.48}}
+
{{#set: ec number=EC-2.3.1.41}}
−
{{#set: gene associated=Tiso_gene_10298|Tiso_gene_10297|Tiso_gene_4521|Tiso_gene_18384}}
+
{{#set: gene associated=Tiso_gene_5939|Tiso_gene_14485|Tiso_gene_19302|Tiso_gene_15991}}
−
{{#set: in pathway=TRPSYN-PWY}}
+
{{#set: in pathway=PWY-6113|PWYG-321}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=in-silico_annotation}}
+

Revision as of 18:35, 18 March 2018

Reaction RXN-10059

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-oxoacyl-synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6113, superpathway of mycolate biosynthesis: PWY-6113
    • 8 reactions found over 12 reactions in the full pathway
  • PWYG-321, mycolate biosynthesis: PWYG-321
    • 86 reactions found over 182 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN1G-287&oldid=25459"