Difference between revisions of "3-7-DIMETHYLXANTHINE"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1TRANSKETO-RXN 1TRANSKETO-RXN] == * direction: ** REVERSIBLE * common name: ** transketolase * ec n...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11195 RXN-11195] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** cytochrome_b5_reduct...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1TRANSKETO-RXN 1TRANSKETO-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11195 RXN-11195] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** transketolase
+
** ORF
 +
** cytochrome_b5_reductase
 +
** nadh-cytochrome_b5reductase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1]
+
** [http://enzyme.expasy.org/EC/1.6.2.2 EC-1.6.2.2]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GAP]][c] '''+''' 1 [[D-SEDOHEPTULOSE-7-P]][c] '''<=>''' 1 [[RIBOSE-5P]][c] '''+''' 1 [[XYLULOSE-5-PHOSPHATE]][c]
+
** 1 [[NADH]][c] '''+''' 2 [[Ferrihemoglobins]][c] '''=>''' 1 [[PROTON]][c] '''+''' 2 [[Ferrohemoglobins]][c] '''+''' 1 [[NAD]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 D-sedoheptulose 7-phosphate[c] '''<=>''' 1 D-ribose 5-phosphate[c] '''+''' 1 D-xylulose 5-phosphate[c]
+
** 1 NADH[c] '''+''' 2 a ferrihemoglobin[c] '''=>''' 1 H+[c] '''+''' 2 a ferrohemoglobin[c] '''+''' 1 NAD+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11559]]
+
* [[Tiso_gene_7152]]
−
** EXPERIMENTAL_ANNOTATION
+
** IN-SILICO_ANNOTATION
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_5008]]
+
* [[Tiso_gene_8773]]
 +
** IN-SILICO_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_19905]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
* [[Tiso_gene_6189]]
 +
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[athaliana]]
 
−
** [[pantograph]]-[[synechocystis]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 
−
** '''11''' reactions found over '''15''' reactions in the full pathway
 
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 
−
** '''13''' reactions found over '''13''' reactions in the full pathway
 
−
* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[synechocystis]]
+
*** Tool: [[pathwaytools]]
−
*** [[athaliana]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10508 10508]
+
{{#set: common name=ORF}}
−
* LIGAND-RXN:
+
{{#set: common name=cytochrome_b5_reductase}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01641 R01641]
+
{{#set: common name=nadh-cytochrome_b5reductase}}
−
* UNIPROT:
+
{{#set: ec number=EC-1.6.2.2}}
−
** [http://www.uniprot.org/uniprot/P29401 P29401]
+
{{#set: gene associated=Tiso_gene_7152|Tiso_gene_8773|Tiso_gene_19905|Tiso_gene_6189}}
−
** [http://www.uniprot.org/uniprot/P33570 P33570]
+
{{#set: in pathway=}}
−
** [http://www.uniprot.org/uniprot/P21725 P21725]
+
−
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
+
−
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
+
−
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
+
−
** [http://www.uniprot.org/uniprot/P21726 P21726]
+
−
** [http://www.uniprot.org/uniprot/P47312 P47312]
+
−
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
+
−
** [http://www.uniprot.org/uniprot/P43757 P43757]
+
−
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
+
−
** [http://www.uniprot.org/uniprot/P45694 P45694]
+
−
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
+
−
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
+
−
** [http://www.uniprot.org/uniprot/P34736 P34736]
+
−
** [http://www.uniprot.org/uniprot/P33315 P33315]
+
−
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
+
−
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
+
−
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
+
−
** [http://www.uniprot.org/uniprot/P46708 P46708]
+
−
** [http://www.uniprot.org/uniprot/P75611 P75611]
+
−
** [http://www.uniprot.org/uniprot/P73282 P73282]
+
−
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
+
−
** [http://www.uniprot.org/uniprot/O20250 O20250]
+
−
** [http://www.uniprot.org/uniprot/O78327 O78327]
+
−
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
+
−
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
+
−
** [http://www.uniprot.org/uniprot/P23254 P23254]
+
−
** [http://www.uniprot.org/uniprot/P27302 P27302]
+
−
** [http://www.uniprot.org/uniprot/P29277 P29277]
+
−
** [http://www.uniprot.org/uniprot/P22976 P22976]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=transketolase}}
+
−
{{#set: ec number=EC-2.2.1.1}}
+
−
{{#set: gene associated=Tiso_gene_11559|Tiso_gene_5008}}
+
−
{{#set: in pathway=P124-PWY|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=synechocystis|athaliana}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 18:35, 18 March 2018

Reaction RXN-11195

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • cytochrome_b5_reductase
    • nadh-cytochrome_b5reductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=3-7-DIMETHYLXANTHINE&oldid=25476"