Difference between revisions of "CPD-1825"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACSERLY-RXN ACSERLY-RXN] == * direction: ** REVERSIBLE * common name: ** cysteine_synthase ** cog00...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALPMUT-RXN GALPMUT-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** udp-galactopyranose...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACSERLY-RXN ACSERLY-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GALPMUT-RXN GALPMUT-RXN] ==
 
* direction:
 
* direction:
 
** REVERSIBLE
 
** REVERSIBLE
 
* common name:
 
* common name:
−
** cysteine_synthase
+
** ORF
−
** cog0031:_cysteine_synthase
+
** udp-galactopyranose_mutase
−
** cysteine
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.5.1.47 EC-2.5.1.47]
+
** [http://enzyme.expasy.org/EC/5.4.99.9 EC-5.4.99.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[HS]][c] '''+''' 1 [[ACETYLSERINE]][c] '''<=>''' 1 [[CYS]][c] '''+''' 1 [[ACET]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[CPD-14553]][c] '''<=>''' 1 [[UDP-D-GALACTO-14-FURANOSE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 hydrogen sulfide[c] '''+''' 1 O-acetyl-L-serine[c] '''<=>''' 1 L-cysteine[c] '''+''' 1 acetate[c] '''+''' 1 H+[c]
+
** 1 UDP-&alpha;-D-galactose[c] '''<=>''' 1 UDP-&alpha;-D-galactofuranose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17043]]
+
* [[Tiso_gene_15395]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
* [[Tiso_gene_3775]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_7852]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_12184]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2283]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_819]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6110]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
** [[pantograph]]-[[creinhardtii]]
 
 
== Pathways  ==
 
== Pathways  ==
−
* [[CYSTSYN-PWY]], L-cysteine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=CYSTSYN-PWY CYSTSYN-PWY]
+
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''2''' reactions found over '''17''' reactions in the full pathway
 +
* [[OANTIGEN-PWY]], O-antigen building blocks biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=OANTIGEN-PWY OANTIGEN-PWY]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7328 PWY-7328]
 +
** '''5''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7622]], UDP-galactofuranose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7622 PWY-7622]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[creinhardtii]]
+
*** Tool: [[pathwaytools]]
−
*** [[synechocystis]]
+
** Source: [[annotation-experimental_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14829 14829]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24132 24132]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00897 R00897]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00505 R00505]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P31300 P31300]
+
** [http://www.uniprot.org/uniprot/Q9PML8 Q9PML8]
−
** [http://www.uniprot.org/uniprot/Q43153 Q43153]
+
−
** [http://www.uniprot.org/uniprot/O67507 O67507]
+
−
** [http://www.uniprot.org/uniprot/P47998 P47998]
+
−
** [http://www.uniprot.org/uniprot/Q9V1Q3 Q9V1Q3]
+
−
** [http://www.uniprot.org/uniprot/Q9RW80 Q9RW80]
+
−
** [http://www.uniprot.org/uniprot/P56067 P56067]
+
−
** [http://www.uniprot.org/uniprot/P63873 P63873]
+
−
** [http://www.uniprot.org/uniprot/Q9CI26 Q9CI26]
+
−
** [http://www.uniprot.org/uniprot/Q9ZMW6 Q9ZMW6]
+
−
** [http://www.uniprot.org/uniprot/P45040 P45040]
+
−
** [http://www.uniprot.org/uniprot/Q9WZD3 Q9WZD3]
+
−
** [http://www.uniprot.org/uniprot/Q9CHF0 Q9CHF0]
+
−
** [http://www.uniprot.org/uniprot/P0A534 P0A534]
+
−
** [http://www.uniprot.org/uniprot/P71128 P71128]
+
−
** [http://www.uniprot.org/uniprot/O05393 O05393]
+
−
** [http://www.uniprot.org/uniprot/O34476 O34476]
+
−
** [http://www.uniprot.org/uniprot/Q9JQL6 Q9JQL6]
+
−
** [http://www.uniprot.org/uniprot/P38076 P38076]
+
−
** [http://www.uniprot.org/uniprot/Q7M1J2 Q7M1J2]
+
−
** [http://www.uniprot.org/uniprot/P29848 P29848]
+
−
** [http://www.uniprot.org/uniprot/P32260 P32260]
+
−
** [http://www.uniprot.org/uniprot/Q00834 Q00834]
+
−
** [http://www.uniprot.org/uniprot/Q43317 Q43317]
+
−
** [http://www.uniprot.org/uniprot/P47999 P47999]
+
−
** [http://www.uniprot.org/uniprot/Q43726 Q43726]
+
−
** [http://www.uniprot.org/uniprot/P80608 P80608]
+
−
** [http://www.uniprot.org/uniprot/Q59447 Q59447]
+
−
** [http://www.uniprot.org/uniprot/P53206 P53206]
+
−
** [http://www.uniprot.org/uniprot/P37887 P37887]
+
−
** [http://www.uniprot.org/uniprot/Q59529 Q59529]
+
−
** [http://www.uniprot.org/uniprot/P0A1E3 P0A1E3]
+
−
** [http://www.uniprot.org/uniprot/P0ABK5 P0ABK5]
+
−
** [http://www.uniprot.org/uniprot/P16703 P16703]
+
−
** [http://www.uniprot.org/uniprot/O81154 O81154]
+
−
** [http://www.uniprot.org/uniprot/O81155 O81155]
+
−
** [http://www.uniprot.org/uniprot/O81523 O81523]
+
−
** [http://www.uniprot.org/uniprot/Q93244 Q93244]
+
−
** [http://www.uniprot.org/uniprot/O45679 O45679]
+
−
** [http://www.uniprot.org/uniprot/Q9S2H1 Q9S2H1]
+
−
** [http://www.uniprot.org/uniprot/P87131 P87131]
+
−
** [http://www.uniprot.org/uniprot/Q9XDU7 Q9XDU7]
+
−
** [http://www.uniprot.org/uniprot/Q9UWP0 Q9UWP0]
+
−
** [http://www.uniprot.org/uniprot/O32978 O32978]
+
−
** [http://www.uniprot.org/uniprot/Q9RAS8 Q9RAS8]
+
−
** [http://www.uniprot.org/uniprot/Q9S757 Q9S757]
+
−
** [http://www.uniprot.org/uniprot/Q9S6Z7 Q9S6Z7]
+
−
** [http://www.uniprot.org/uniprot/Q43725 Q43725]
+
−
** [http://www.uniprot.org/uniprot/Q9SMY4 Q9SMY4]
+
 
{{#set: direction=REVERSIBLE}}
 
{{#set: direction=REVERSIBLE}}
−
{{#set: common name=cysteine_synthase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=cog0031:_cysteine_synthase}}
+
{{#set: common name=udp-galactopyranose_mutase}}
−
{{#set: common name=cysteine}}
+
{{#set: ec number=EC-5.4.99.9}}
−
{{#set: ec number=EC-2.5.1.47}}
+
{{#set: gene associated=Tiso_gene_15395|Tiso_gene_3775}}
−
{{#set: gene associated=Tiso_gene_17043|Tiso_gene_7852|Tiso_gene_12184|Tiso_gene_2283|Tiso_gene_819|Tiso_gene_6110}}
+
{{#set: in pathway=PWY-6397|OANTIGEN-PWY|PWY-7328|PWY-7622}}
−
{{#set: in pathway=CYSTSYN-PWY}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 19:38, 18 March 2018

Reaction GALPMUT-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • udp-galactopyranose_mutase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6397, mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: PWY-6397
    • 2 reactions found over 17 reactions in the full pathway
  • OANTIGEN-PWY, O-antigen building blocks biosynthesis (E. coli): OANTIGEN-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7328, superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: PWY-7328
    • 5 reactions found over 10 reactions in the full pathway
  • PWY-7622, UDP-galactofuranose biosynthesis: PWY-7622
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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