Difference between revisions of "Aliphatic-Nitriles"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9540 RXN-9540] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxo-palmitoyl-[acyl-carrier...")
(Created page with "Category:Gene == Gene Tiso_gene_2581 == * left end position: ** 12617 * transcription direction: ** POSITIVE * right end position: ** 18752 * centisome position: ** 66.876...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9540 RXN-9540] ==
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== Gene Tiso_gene_2581 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 12617
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* common name:
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* transcription direction:
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** 3-oxo-palmitoyl-[acyl-carrier protein] reductase
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** POSITIVE
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** polyketide_synthase
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* right end position:
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** 3-oxoacyl-(acyl-carrier-protein)
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** 18752
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** 66.87692   
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[GLUTAMATE-SYNTHASE-FERREDOXIN-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[3-oxo-palmitoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''=>''' 1 [[R-3-Hydroxypalmitoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
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** [[pantograph]]-[[athaliana]]
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* With common name(s):
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** [[pantograph]]-[[esiliculosus]]
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** 1 H+[c] '''+''' 1 a 3-oxo-palmitoyl-[acp][c] '''+''' 1 NADPH[c] '''=>''' 1 a (3R)-3-hydroxypalmitoyl-[acp][c] '''+''' 1 NADP+[c]
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* [[GLUTAMATE-SYNTHASE-NADH-RXN]]
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** [[pantograph]]-[[athaliana]]
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[synechocystis]]
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Genes have been associated with this reaction based on different elements listed below.
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_13083]]
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** [[pantograph]]-[[creinhardtii]]
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** IN-SILICO_ANNOTATION
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** [[pantograph]]-[[creinhardtii]]
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***EC-NUMBER
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* [[GLUTAMATESYN-RXN]]
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** EXPERIMENTAL_ANNOTATION
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** in-silico_annotation
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***EC-NUMBER
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***ec-number
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** experimental_annotation
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***ec-number
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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* [[GLUTAMIN-RXN]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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** [[pantograph]]-[[esiliculosus]]
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* [[GLUTDEHYD-RXN]]
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** in-silico_annotation
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***ec-number
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** experimental_annotation
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***ec-number
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* [[RXN-12878]]
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_136]]
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== Pathways associated ==
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** IN-SILICO_ANNOTATION
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* [[GLUTAMINEFUM-PWY]]
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***EC-NUMBER
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* [[GLUTAMINDEG-PWY]]
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* [[Tiso_gene_500]]
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* [[PWY-5913]]
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** IN-SILICO_ANNOTATION
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* [[PWY490-3]]
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***EC-NUMBER
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* [[GLUTSYN-PWY]]
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* [[Tiso_gene_135]]
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* [[PWY-4341]]
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** IN-SILICO_ANNOTATION
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* [[PWY-5675]]
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***EC-NUMBER
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* [[PWY-6549]]
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* [[Tiso_gene_10876]]
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* [[PWY-6964]]
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** IN-SILICO_ANNOTATION
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* [[GLUGLNSYN-PWY]]
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***EC-NUMBER
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* [[GLUTSYNIII-PWY]]
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* [[Tiso_gene_9885]]
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* [[CITRULBIO-PWY]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-6963]]
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=12617}}
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{{#set: common name=3-oxo-palmitoyl-[acyl-carrier protein] reductase}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: common name=polyketide_synthase}}
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{{#set: right end position=18752}}
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{{#set: common name=3-oxoacyl-(acyl-carrier-protein)}}
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{{#set: centisome position=66.87692    }}
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{{#set: ec number=EC-2.3.1.86}}
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{{#set: reaction associated=GLUTAMATE-SYNTHASE-FERREDOXIN-RXN|GLUTAMATE-SYNTHASE-NADH-RXN|GLUTAMATESYN-RXN|GLUTAMIN-RXN|GLUTDEHYD-RXN|RXN-12878}}
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{{#set: ec number=EC-2.3.1.85}}
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{{#set: pathway associated=GLUTAMINEFUM-PWY|GLUTAMINDEG-PWY|PWY-5913|PWY490-3|GLUTSYN-PWY|PWY-4341|PWY-5675|PWY-6549|PWY-6964|GLUGLNSYN-PWY|GLUTSYNIII-PWY|CITRULBIO-PWY|PWY-6963}}
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{{#set: ec number=EC-1.1.1.100}}
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{{#set: gene associated=Tiso_gene_13083|Tiso_gene_136|Tiso_gene_500|Tiso_gene_135|Tiso_gene_10876|Tiso_gene_9885|Tiso_gene_13394}}
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{{#set: in pathway=PWY-5971|PWY-5994}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 18:39, 18 March 2018

Gene Tiso_gene_2581

  • left end position:
    • 12617
  • transcription direction:
    • POSITIVE
  • right end position:
    • 18752
  • centisome position:
    • 66.87692
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Aliphatic-Nitriles&oldid=25890"