Difference between revisions of "RXN-12626"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] == * direction: ** LEFT-TO-RIGHT * common name: ** atp-dependent_rna_helicase_...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name:...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2-ISOPROPYLMALATESYN-RXN 2-ISOPROPYLMALATESYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** atp-dependent_rna_helicase_ded1
+
** 2-isopropylmalate_synthase_chloroplastic
−
** rna_helicase
+
−
** dead_box_rna_helicase
+
−
** ORF
+
−
** dead_box_helicase
+
−
** atp-dependent_rna_helicase-like_protein_db10
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.6.4.13 EC-3.6.4.13]
+
** [http://enzyme.expasy.org/EC/2.3.3.13 EC-2.3.3.13]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[Wound-RNA]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Unwound-RNA]][c]
+
** 1 [[ACETYL-COA]][c] '''+''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[3-CARBOXY-3-HYDROXY-ISOCAPROATE]][c] '''+''' 1 [[CO-A]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 wound RNA[c] '''+''' 1 ATP[c] '''=>''' 1 H+[c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 an unwound RNA[c]
+
** 1 acetyl-CoA[c] '''+''' 1 3-methyl-2-oxobutanoate[c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 (2S)-2-isopropylmalate[c] '''+''' 1 coenzyme A[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_5272]]
+
* [[Tiso_gene_11453]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_17819]]
+
** [[pantograph]]-[[athaliana]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[synechocystis]]
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11551]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_13864]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13863]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17804]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14774]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
* [[Tiso_gene_15465]]
+
** [[pantograph]]-[[creinhardtii]]
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13862]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9370]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[LEUSYN-PWY]], L-leucine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=LEUSYN-PWY LEUSYN-PWY]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6871]], 3-methylbutanol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6871 PWY-6871]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[manual]]:
+
** Source: [[orthology-creinhardtii]]
−
** [[primary_network]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-synechocystis]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[experimental_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21524 21524]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01213 R01213]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P06208 P06208]
 +
** [http://www.uniprot.org/uniprot/Q58595 Q58595]
 +
** [http://www.uniprot.org/uniprot/P09151 P09151]
 +
** [http://www.uniprot.org/uniprot/Q9PLV9 Q9PLV9]
 +
** [http://www.uniprot.org/uniprot/Q9JUK6 Q9JUK6]
 +
** [http://www.uniprot.org/uniprot/Q58787 Q58787]
 +
** [http://www.uniprot.org/uniprot/P94565 P94565]
 +
** [http://www.uniprot.org/uniprot/Q9JP75 Q9JP75]
 +
** [http://www.uniprot.org/uniprot/Q02141 Q02141]
 +
** [http://www.uniprot.org/uniprot/P48575 P48575]
 +
** [http://www.uniprot.org/uniprot/O86511 O86511]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=atp-dependent_rna_helicase_ded1}}
+
{{#set: common name=2-isopropylmalate_synthase_chloroplastic}}
−
{{#set: common name=rna_helicase}}
+
{{#set: ec number=EC-2.3.3.13}}
−
{{#set: common name=dead_box_rna_helicase}}
+
{{#set: gene associated=Tiso_gene_11453}}
−
{{#set: common name=ORF}}
+
{{#set: in pathway=LEUSYN-PWY|PWY-6871}}
−
{{#set: common name=dead_box_helicase}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: common name=atp-dependent_rna_helicase-like_protein_db10}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
−
{{#set: ec number=EC-3.6.4.13}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: gene associated=Tiso_gene_5272|Tiso_gene_17819|Tiso_gene_11551|Tiso_gene_13864|Tiso_gene_13863|Tiso_gene_17804|Tiso_gene_14774|Tiso_gene_15465|Tiso_gene_13862|Tiso_gene_9370}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:40, 18 March 2018

Reaction 2-ISOPROPYLMALATESYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 2-isopropylmalate_synthase_chloroplastic
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • LEUSYN-PWY, L-leucine biosynthesis: LEUSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6871, 3-methylbutanol biosynthesis (engineered): PWY-6871
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12626&oldid=26019"