Difference between revisions of "Tiso gene 1142"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10773 RXN-10773] == * direction: ** LEFT-TO-RIGHT * common name: ** low_quality_protein:_beta-g...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16165 RXN-16165] == * direction: ** LEFT-TO-RIGHT * common name: ** methionyl-trna_synthetase *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10773 RXN-10773] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16165 RXN-16165] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
+
** methionyl-trna_synthetase
−
** ORF
+
−
** beta-glucosidase-like_chloroplastic
+
−
** beta_glucosidase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
+
** [http://enzyme.expasy.org/EC/6.1.1.10 EC-6.1.1.10]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[CELLOBIOSE]][c] '''=>''' 2 [[Glucopyranose]][c]
+
** 1 [[MET]][c] '''+''' 1 [[Initiation-tRNAmet]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[L-methionyl-tRNAfmet]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 β-D-cellobiose[c] '''=>''' 2 D-glucopyranose[c]
+
** 1 L-methionine[c] '''+''' 1 initiator tRNAmet[c] '''+''' 1 ATP[c] '''=>''' 1 an L-methionyl-[initiator tRNAmet][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6187]]
+
* [[Tiso_gene_406]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13306]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15067]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2344]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6188]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2843]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13305]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3467]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6497]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_8669]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10001]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_6007]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5836]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_15066]]
+
* [[Tiso_gene_284]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
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***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6788]], cellulose degradation II (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6788 PWY-6788]
+
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[annotation]]
−
** [[pantograph]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[esiliculosus]]
+
*** Tool: [[pathwaytools]]
−
* [[annotation]]:
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pathwaytools]]:
+
*** Tool: [[pathwaytools]]
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30682 30682]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00026 R00026]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
+
{{#set: common name=methionyl-trna_synthetase}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-6.1.1.10}}
−
{{#set: common name=beta-glucosidase-like_chloroplastic}}
+
{{#set: gene associated=Tiso_gene_406|Tiso_gene_284}}
−
{{#set: common name=beta_glucosidase}}
+
{{#set: in pathway=TRNA-CHARGING-PWY}}
−
{{#set: ec number=EC-3.2.1.21}}
+
−
{{#set: gene associated=Tiso_gene_6187|Tiso_gene_13306|Tiso_gene_15067|Tiso_gene_2344|Tiso_gene_6188|Tiso_gene_2843|Tiso_gene_13305|Tiso_gene_3467|Tiso_gene_6497|Tiso_gene_8669|Tiso_gene_10001|Tiso_gene_6007|Tiso_gene_5836|Tiso_gene_15066}}
+
−
{{#set: in pathway=PWY-6788}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 18:40, 18 March 2018

Reaction RXN-16165

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • methionyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-methionine[c] + 1 initiator tRNAmet[c] + 1 ATP[c] => 1 an L-methionyl-[initiator tRNAmet][c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1142&oldid=26056"