Difference between revisions of "Tiso gene 12148"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.3.2.8-RXN 3.3.2.8-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** limonene-12-epoxide_hyd...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDO-8PSYNTH-RXN KDO-8PSYNTH-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** bifunctional_kd...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.3.2.8-RXN 3.3.2.8-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KDO-8PSYNTH-RXN KDO-8PSYNTH-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** limonene-12-epoxide_hydrolase_protein
+
** bifunctional_kdo_8-p_synthase_dtdp-6-deoxy-l-hexose_3-o-methyltransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.3.2.8 EC-3.3.2.8]
+
** [http://enzyme.expasy.org/EC/2.5.1.55 EC-2.5.1.55]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[4R-Limonene-1-2-epoxides]][c] '''=>''' 1 [[CPD-8222]][c]
+
** 1 [[CPD-18118]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[KDO-8P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a (4R)-1,2-epoxymenth-8-ene[c] '''=>''' 1 (1S,2S,4R)-limonene-1,2-diol[c]
+
** 1 D-arabinofuranose 5-phosphate[c] '''+''' 1 H2O[c] '''+''' 1 phosphoenolpyruvate[c] '''=>''' 1 phosphate[c] '''+''' 1 3-deoxy-D-manno-octulosonate 8-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_15422]]
+
* [[Tiso_gene_1350]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***AUTOMATED-NAME-MATCH
+
***EC-NUMBER
 +
* [[Tiso_gene_20348]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5923]], limonene degradation I (D-limonene): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5923 PWY-5923]
+
* [[PWY-7674]], CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7674 PWY-7674]
 
** '''1''' reactions found over '''7''' reactions in the full pathway
 
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-1269]], CMP-3-deoxy-D-manno-octulosonate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1269 PWY-1269]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[in-silico_annotation]]
+
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10700 10700]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14053 14053]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R03254 R03254]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9PIB8 Q9PIB8]
 +
** [http://www.uniprot.org/uniprot/P45251 P45251]
 +
** [http://www.uniprot.org/uniprot/Q9JU48 Q9JU48]
 +
** [http://www.uniprot.org/uniprot/P0A715 P0A715]
 +
** [http://www.uniprot.org/uniprot/O50044 O50044]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=limonene-12-epoxide_hydrolase_protein}}
+
{{#set: common name=bifunctional_kdo_8-p_synthase_dtdp-6-deoxy-l-hexose_3-o-methyltransferase}}
−
{{#set: ec number=EC-3.3.2.8}}
+
{{#set: ec number=EC-2.5.1.55}}
−
{{#set: gene associated=Tiso_gene_15422}}
+
{{#set: gene associated=Tiso_gene_1350|Tiso_gene_20348}}
−
{{#set: in pathway=PWY-5923}}
+
{{#set: in pathway=PWY-7674|PWY-1269}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=in-silico_annotation}}
 

Revision as of 18:46, 18 March 2018

Reaction KDO-8PSYNTH-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • bifunctional_kdo_8-p_synthase_dtdp-6-deoxy-l-hexose_3-o-methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-arabinofuranose 5-phosphate[c] + 1 H2O[c] + 1 phosphoenolpyruvate[c] => 1 phosphate[c] + 1 3-deoxy-D-manno-octulosonate 8-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7674, CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis: PWY-7674
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-1269, CMP-3-deoxy-D-manno-octulosonate biosynthesis: PWY-1269
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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