Difference between revisions of "Tiso gene 10282"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-170 CPD-170] == * smiles: ** C(O)C1(C(O)C(O)C(O)C(O1)OCC4(C(O)C(O)C(O)C(OCC3(C(O)C(O)C(O)C(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] == * direction: ** LEFT-TO-RIGHT * common name: ** ump-cmp_kinase ** cytidylat...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-170 CPD-170] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12002 RXN-12002] ==
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* smiles:
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* direction:
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** C(O)C1(C(O)C(O)C(O)C(O1)OCC4(C(O)C(O)C(O)C(OCC3(C(O)C(O)C(O)C(OC2(CO)(C(O)C(O)C(CO)O2))O3))O4))
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=UQZIYBXSHAGNOE-XNSRJBNMSA-N
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* common name:
 
* common name:
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** stachyose
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** ump-cmp_kinase
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* molecular weight:
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** cytidylate_kinase
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** 666.583   
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* ec number:
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** [http://enzyme.expasy.org/EC/2.7.4.22 EC-2.7.4.22]
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** [http://enzyme.expasy.org/EC/2.7.4.14 EC-2.7.4.14]
 
* Synonym(s):
 
* Synonym(s):
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** (2R,3R,4S,5S,6R)-2-[[(2R,3S,4S,5R,6R)-6-[(2R,3R,4S,5R,6R)-6-[(2S,3S,4R,5S)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-3,4,5-trihydroxy-oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol
 
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** α-D-Galp-(1->6)-α-D-Galp-(1->6)-α-D-Glcp-(1->2)-β-D-Fruf
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-11501]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[ATP]][c] '''+''' 1 [[UMP]][c] '''=>''' 1 [[UDP]][c] '''+''' 1 [[ADP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[2.4.1.67-RXN]]
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** 1 ATP[c] '''+''' 1 UMP[c] '''=>''' 1 UDP[c] '''+''' 1 ADP[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_17057]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14116]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_2386]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9739]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_19734]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-7176]], UTP and CTP de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7176 PWY-7176]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 10094-58-3
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24400 24400]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=439531 439531]
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* LIGAND-RXN:
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* KEGG-GLYCAN : G00278
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** [http://www.genome.jp/dbget-bin/www_bget?R00158 R00158]
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* HMDB : HMDB03553
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{{#set: direction=LEFT-TO-RIGHT}}
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* LIGAND-CPD:
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{{#set: common name=ump-cmp_kinase}}
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** [http://www.genome.jp/dbget-bin/www_bget?C01613 C01613]
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{{#set: common name=cytidylate_kinase}}
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* CHEMSPIDER:
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{{#set: ec number=EC-2.7.4.22}}
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** [http://www.chemspider.com/Chemical-Structure.388624.html 388624]
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{{#set: ec number=EC-2.7.4.14}}
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* CHEBI:
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{{#set: gene associated=Tiso_gene_17057|Tiso_gene_14116|Tiso_gene_2386|Tiso_gene_9739|Tiso_gene_19734}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17164 17164]
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{{#set: in pathway=PWY-7176}}
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{{#set: smiles=C(O)C1(C(O)C(O)C(O)C(O1)OCC4(C(O)C(O)C(O)C(OCC3(C(O)C(O)C(O)C(OC2(CO)(C(O)C(O)C(CO)O2))O3))O4))}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: inchi key=InChIKey=UQZIYBXSHAGNOE-XNSRJBNMSA-N}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|manual-primary_network|orthology-creinhardtii}}
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{{#set: common name=stachyose}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: molecular weight=666.583    }}
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−
{{#set: common name=(2R,3R,4S,5S,6R)-2-[[(2R,3S,4S,5R,6R)-6-[(2R,3R,4S,5R,6R)-6-[(2S,3S,4R,5S)-3,4-dihydroxy-2,5-bis(hydroxymethyl)oxolan-2-yl]oxy-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-3,4,5-trihydroxy-oxan-2-yl]methoxy]-6-(hydroxymethyl)oxane-3,4,5-triol|α-D-Galp-(1->6)-α-D-Galp-(1->6)-α-D-Glcp-(1->2)-β-D-Fruf}}
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{{#set: consumed by=RXN-11501}}
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{{#set: consumed or produced by=2.4.1.67-RXN}}
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Revision as of 18:48, 18 March 2018

Reaction RXN-12002

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ump-cmp_kinase
    • cytidylate_kinase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 UMP[c] => 1 UDP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7176, UTP and CTP de novo biosynthesis: PWY-7176
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






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